Continuity mistake: Near the beginning of the episode, Bart is thinking what it would be like to get out of school, you can see his desk quite well and there is nothing on it. But when Bart has finished thinking, a piece of paper has just appeared on his desk.
Continuity mistake: At the very end of the episode, when the kids are lined up to wait to see whether Otto is back driving the bus, there are several shots that switch back and forth between a direct view of the kids and a shot from behind. Lisa changes position between shots. (00:21:15)
Continuity mistake: When Marge sees Homer's car parked illegally over 3 handicapped spots you can see a car parked near Homer's that is orange. Later in the scene when Marge starts writing a ticket up for Homer the car next to Homer's is now a dark brown. (00:14:35 - 00:15:05)
Plot hole: In the car chase, Chief Wiggum says that one of the suspects (Marge) "is wearing a green dress, pearls, and a lot of blue hair." However when we see Marge from the police car all we can see is her hair, so how would he have known about the pearls and dress?
Continuity mistake: In 'Nightmare Cafeteria,' in the opening shot we see Bart standing on a desk in the back row. It cuts to a closeup, and he is now on a desk in the second row from the back, as well as people appearing around him, such as Milhouse, who wasn't even in the classroom in the opening shot. (00:15:25)
Plot hole: In the scene where Bart has to choose the right Roman numeral door in order to avoid the tigers; right as the Shelbyville kids come bursting through the outer door, Bart picks the right door through humorous deduction and escapes. However, the Shelbyville kids are unable to open the door which doesn't make sense, since there is no lock on the door and there wasn't any mention of Bart blocking or sabotaging the door because only a few seconds later we see him on the street continuing to fret about the lemon tree.
Audio problem: After Homer puts the old milk in the fridge and Bart takes a drink from it you will then see Marge use a fork to take the milk out of the carton. Marge says "woof" but her mouth does not move in sequence with the audio.
Continuity mistake: At the end of the episode in church when the group of parishioners moves forward to forgive Ned there is a woman amongst the group who has light green hair. However, when there is a wide angle shot of the group again she is nowhere to be seen.