Factual error: The German agent pretending to be an American pilot is wearing a one piece flying suit from the 1960's when he is questioned by Hogan and the British escapee in the barracks. It even has the US Air Force logo on the sleeve, which didn't come into use until 1947, after the war.
Factual error: In several episodes, the fence around the cooler is visible, and hanging on it, a sign saying "Eingang verboten" meaning "no entry." The correct German term would be "Zutritt verboten." In German, "Eingang" is the opening where you enter a building, not the act of entering one.
Factual error: When the SS guard is calling Sergeant Shultz after seeing the burning fuse, he addresses Shultz as "Sergeant", rather than the proper German word for Shultz's rank, "Feldwebel."
Plot hole: In several occasions throughout the story, e.g. S4E18, Hogan attends parties at Stalag 13 wearing an immaculate US dress uniform. Where did he get that? Dress uniforms are not part of the usual kit a bomber crew brings along with them on their missions.
Continuity mistake: Hogan dumps a bucket of water on Barnes and Davis each, to make it look like they were the ones who hid in the tanker. They get big wet patches on their uniforms from it, but aren't completely wet through and through - which is to be expected, after all it's just a small bucket of water each. After the next cut however, they are completely soaked like they went swimming.
Plot hole: Hogan has his men play romantic music over the radio. Earlier they were afraid of the radio in the observation post being detected. Elsewhere in the series, they try to avoid sending too long to avoid being homed in on - which is correct. Now, if they were to play a whole record at once, wouldn't the homing devices pick up on the transmitter at the camp?
Continuity mistake: When the man and woman from the underground meet Hogan at the Hoffbrau, they're taking off their outer coats. The man takes off a dark brown coat and drops it. Hogan picks it up, hands it to the guy who hangs it up. The man removes his dark brown overcoat revealing a tan coat. The next shot, he"s taking off the dark brown coat again, hangs it up and goes for beer.
Revealing mistake: When the "Boat" is loaded on a "trailer", you can see that it has very little ground clearance. The wheels of the "trailer" actually are hidden behind the boards like on a parade wagon. The boat has no keel and no hull below its freeboard. Besides the question of how the boat got onto the trailer if it is practically built around it, there remains the question of how it is supposed to stay afloat without a keel or a bottom.
Factual error: In many episodes, SS members of all ranks appear - the most notorious recurring character being Major Hochstetter. Curiously enough, Hochstetter couldn't have been a Major in the SS, simply because that rank didn't exist there. The SS used the SA rank system, not the Wehrmacht one. Hochstetter for example would have to be a Sturmbannführer. Colonel Feldkamp would have to be a Standartenführer. To avoid confusion: Hochstetter sometimes claims he is Gestapo, even when he's wearing an SS uniform (different mistake). However, he couldn't be a major there either - he'd have to be a Kriminalrat or Kriminaldirektor, because the Gestapo, which was in principle a civilian police organisation and wasn't half as closely integrated with the SS or the military as the series would have us believe, didn't use military ranks at all.
Factual error: Burkhalter refers to Jesse Owens winning the gold medals in the Berlin Olympics, and that Hitler left the stadium every time Owens was to be presented a medal. Truth was, Hitler left the stadium when another black man won the day before, and didn't snub Owens at all. In fact, Hitler wasn't in attendance the days Owens won.