Factual error: When Bart declares war on Nelson, Herman uses the declaration from the Franco-Prussian war and puts "Bart" in place of "Otto Von Bismarck". The thing is, Bismarck didn't declare the Franco-Prussian War, Napoleon III of France did. A small error, maybe, but something that a war buff like Herman should know.
Factual error: When you see Ned Flanders put the earth back inside the hole, he puts it back in much faster than is possible. In one shot, he is only just starting to put it back in, then you see Bart who talks to himself for a few seconds, then back to Flanders, who has finished burying what is later to be revealed as the plant that he (Ned) drowned.
Factual error: When Chief Wiggum opens the revolver's chamber, there's 5 rounds with one open slot. In the next shot, we see the reverse end of the chamber and it's drawn in such a way to indicate those 5 rounds all have bullets in them still, meaning the empty slot is from when Maggie shot Mr. Burns. But revolvers don't eject spent shells automatically and no one handled the gun after it dropped on the floor. So the empty casing should have still been in there when Wiggum opens it up for the first time.
Factual error: Chief Wiggum visually compares a bullet taken from Homer's gun to the bullet removed from Burns and concludes that they are exactly the same. Excluding the obvious forensic violation, the bullet removed from Burns is still whole and within its casing, meaning that either Maggie took the time to remove the casing and delicately shove it in Mr Burns' bullet wound (which is dumb) or the gun fired the whole casing along with the bullet (which would have blown up the gun).
Factual error: In "Nightmare On Evergreen Terrace", Martin has a dream, in which he speaks Latin. At one point, he says a verb that doesn't exist: "morire". The words is "mori" (to die), "moritur" (noun dies) or "moreris" (you die). The "moirie" is also on the blackboard behind Martin. (00:08:20)