Continuity mistake: When Norman is getting ready to test himself, he lies down on the bed, fastens himself in and the doctor goes to the computer. However, when it shows him being brought in to the chamber he has several electrodes connected to his chest and head. (00:15:20)
Audio problem: After the aeroplane crashed, a dinosaur stepped over it and the windows shattered making the typical sound of made-of-glass things when broken. They are made of plexiglass (a sort of fibrous plastic).
Continuity mistake: In the bedroom scene the girl is holding a clear cup full of beer. The camera goes off her and when it comes back she is holding a blue cup. The camera goes back off her then on her and the cup is clear again. [This mistake does not appear in the unrated version - the blue cup scenes were shot specifically to secure an R rating from the MPAA because the contents are obscured.]. (00:13:20)
Factual error: When Ray leaves his wife Gina and his car is hit by the truck he should still be in England, but when he is being chased through the streets he is in South Africa, the cops in the car are not in English police uniforms or vehicle, police livery is incorrect, and all vehicles have South Africa plates, not English number plates.
Other mistake: Throughout the film Mason goes through all sorts of shenanigans - explosions, fire fights, falling off a cliff, almost drowning, this woman really goes through the wringer. It's a bit surprising then, that at the very end of the film when the good guys finally come to the rescue that she looks like she has just finished posing for a shampoo commercial with not a hair out of place.
Factual error: It is barely credible that a young Victorian woman like Elena would even think about wearing a goatskin miniskirt - exposing her legs in those days would be akin to walking about topless nowadays. Even if she did those bright yellow cotton knickers - gleefully visible in the scene in the beehive - are in no way from the 1860s. Her pants are a hundred years ahead of their time.
Plot hole: An important plot point (in the book and the film) is that Charles Calthrop - thought to be the Jackal, at that stage - played some mysterious part in the 1961 assassination of Rafael Trujillo, the dictator of The Dominican Republic, and rumours of his involvement came to the attention of MI6 and Special Branch, leading to the accidental exposure of the Jackal's false passport. In fact there is no mystery at all about the assassination of Trujillo and there were no shadowy foreigners involved. It was organised by Trujillo's own senior aides, amongst them General Juan Tomás Díaz, Antonio de la Maza, Amado Garcia Guerroro and General Antonio Imbert Barrera. The gunman was later identified as Luis Aniama Tio. All the conspirators except Tio were arrested, tortured, and shot. There was no panicked evacuation of foreigners who were involved with Trujillo's regime, and no reason for them to be concerned - the government did not fall and Trujillo's brother Hector took over as President, ruling in a brutal and totalitarian manner for a further eight years. Any rumours of a mysterious Englishman would have been dismissed out of hand and would not have made it onto even the lowest level filing system anywhere in Whitehall.
Visible crew/equipment: When Melissa dodges the truck that has fallen from sky and Dusty rushes to open a door and help Melissa get out of the truck, the reflection of a camera is seen in the bottom right corner of the truck window. As they move out and pan to the right, you can see a reflection of the same camera and cameraman at the bottom right corner of the truck door as they move away. (00:33:50)
Factual error: Most ventilation ducts are not large enough for a person to crawl around in, and any duct large enough for an adult to fit in wouldn't be able to support the person's weight. In the rare event that a company could afford a large ventilation system that could support a person's weight, they would likely forgo it anyway, as it would pose a security risk.
Factual error: The vents that Hunt and his sidekick crawl down at CIA Headquarters are standard galvanized iron box vents; they are very common in the building trade. Try walking or crawling down one - you'll make a noise like the sky is falling down. People will be able to hear you for miles. Every person in that building would know somebody crawling about in the vent system. (This error applies to dozens of films, not only this one).
Visible crew/equipment: As Jake approaches the house after the van drives off, it looks like a crew member got caught at the side of the house and moves back as Jake is taking camera footage. (01:03:25)
Continuity mistake: Gimli is lying with his face under the water, after jumping off the Deeping Wall and landing on the Uruk-hai. In the close-up, the right arm that grabs Gimli's shoulder to help him out of the water is Legolas' right arm. Yet, in the wide shot, suddenly it is Aragorn helping Gimli to his feet, not Legolas. (01:11:10)
Factual error: While Bridger is watching the film of the Mafia boss following Beckerman he signals for the film to be stopped so he can look at the close up shot of the man. He is watching a 16mm film shown through a bog standard projector - stop a film like that for more than two seconds without closing down the projector shutter (this doesn't happen - if it did the screen would darken instantly) and it will melt and catch fire. This doesn't happen.
Continuity mistake: The tyres on the crotch rocket motorcycles they were riding kept changing from knobbly tyres to road slicks, back and forth depending on what terrain they were on. Easiest to see when Ethan skids on the road to avoid the white van - clear shot of slick tyres - then about 30 seconds later they're on the dirt, he skids into the old car and you can easily see that he's got off-road tyres front and back.
Revealing mistake: In one shot when the boat is pulling away from the waterfall, you can clearly see that the shot is the same one they used earlier in the movie. The water from the waterfall now is going up the cliff! They have just put it in reverse.