Continuity mistake: When the security team is escorting Nomad back to the holding area, he goes his own way. One of the team then says, "Hey Nomad!" and begins to reach for his phaser. But in the next shot, he has already got his phaser out and trained on Nomad.
Continuity mistake: The Klingon is standing on a hillside above Maab, yet when he fires his phaser, the beam streaks upward. From that angle, he wouldn't have hit anything but sky. Nevertheless, the beam somehow re-angles itself downward so that it hits and kills Maab. (00:46:05)
Continuity mistake: Mr Checkov has a rather unfortunate hair styling during the beginning of his role in Season 2. In this episode his hair is normal until the end, where in between being given an order and carrying it out he somehow manages to go and have his hair professionally done and made all bouffant. (00:47:15)
Continuity mistake: Mr. Sulu's equipment comes up to aid him at red alert, yet shortly after it is gone. (00:39:00 - 00:40:00)
Continuity mistake: Throughout the entire episode the planet's sky is red, yet during the scenes where the clouds come and lightning strikes, it becomes obvious that they simply used stock footage of Earth's clouds, since the sky is blue. (00:11:50)
This Side of Paradise - S1-E25
Continuity mistake: Kirk threw a "spore flower" across the bridge and it landed towards the front of the bridge. Later on, Kirk returns to the bridge and despite all the crew being on the planet the flower is gone. (00:28:20)
A Taste of Armageddon - S1-E24
Continuity mistake: The landing party had been apprehended and placed in a locked room under the supervision of a single guard. Spock manages to free them and Kirk knocks out this guard, leaving him in the locked room. Later on in the episode, they return to this very room and somehow this guard is gone. He could not have woken up and walked out because it is a locked room and Kirk took his key. (00:23:45)
Continuity mistake: In the original version, the planet is the same as the one used in "Bread and Circuses", but when the Enterprise leaves orbit at the end, it is a totally different planet, as it is the one used in "Friday's Child".
Continuity mistake: When the Enterprise is trying to push away the asteroid using the deflector, a quick shot of Uhura is shown from stock footage of "And the Children Shall Lead," but she is not in the rest of the episode.
Continuity mistake: Kirk turns his head and displays a stunned look... a full second before the Gorn even starts to disappear. (00:45:47)
Continuity mistake: At the end, on the Bridge, when the warning marker explodes, Kirk's arm shifts position between shots.
Continuity mistake: When Scotty inhales the gas, the amount of smoke changes between shots.
Continuity mistake: In the opening, the crewman gets a few drops of the infectant on his hand, but the reddish mass on the wall remains. On the ship, when the spectral view is shown, the red mass is nowhere to be seen.
Continuity mistake: When Sulu first emerges on the Bridge, Kirk confronts him, and standing a couple feet from the rapier. A second later, Kirk's a few inches from it.
Continuity mistake: As there were two screen used models of the Enterprise, when the ship is seen flipping from one universe to the other and back, the nacelles of the Imperial Enterprise have the solid red fronts with what appear to be antennae.
Continuity mistake: Kirk has a sunburn on his face and chest (it appears to end partway down his chest-most noticeable in the scene shortly after his identity is revealed to the Klingons). First of all, how does one get a sunburn while flying through space (and one that does not match the pattern of the uniform). If one wants to explain it away as being from a recent Shore Leave or Enterprise tanning bed, the issue still remains that the intensity of the sunburn changes as the episode continues.
The Ultimate Computer - S2-E24
Continuity mistake: The doctor and Spock are facing each other, the camera angle changes and they are suddenly shoulder to shoulder. (00:26:50)
The Alternative Factor - S1-E28
Continuity mistake: Lazarus had knocked out the transporter technician, but when Kirk arrives he is fine and operating the transporter. (00:37:35)
Answer: Kirk was getting his physical and Dr. McCoy probably turned off communications, because if he hadn't, Kirk would have left and headed straight for the bridge, leaving McCoy irritated.