Plot hole: The first time they communicate with the "entity" in the spaceship, they find a correspondence between numbers sent by the entity and letters of the alphabet. The entity presents itself as "Jerry". Later on, the entity tells Dustin Hoffman, "Stop calling me Jerry" - and then Dustin Hoffman realizes that the number-letter correspondence was wrong, and the actual name of the entity was "Harry". But if that is true, how could they have communicated without problems before? The very first word that the entity used was "hello", which would have to be displayed wrong, since it begins with an "h" and has an "e".
Plot hole: Suzie pulls out some of her teeth with a pair of heavy pliers. This would leave conspicuous tool marks on the teeth that would be visible to the naked eye, let alone under forensic examination. The conclusion would be that Suzie is missing, not dead, and the whole plot would unravel from there.
Plot hole: The parents meet and get married on the QE II and then we jump to the girls getting to camp 11 years and nine months later. We learn their 12th birthdays are on October 11, so at the time of the camp (which must be around July/August) they are 11 years and around 9 months old. They should only be 11, given it takes 9 months to grow a baby, but instead they're nearly 12.
Plot hole: In the end of the film it is heard the police want to exhume the body of Charles Lee Ray from his grave site in New Jersey. Now when Chucky and the crew get to the grave site they find and kill a coroner who is digging up the body. He is the only one there at 1am, by himself, a lonely coroner without any police officers, after all this is a police investigation and I doubt the cops would have him there alone. Then right at the end the Detective who is hunting them arrives. Now he is a cop from Lockport, about six states away. A. Why did he drive all that way to see the body? B. A cop from all the way down there shows up but no new Jersey cops are at the scene?
Plot hole: During the end the murderer is thrown out the front window of the building. The students leave the building through the front door, but yet there is no body, and that doesn't seem to bother them!
Plot hole: The original ending planned was a massive tropical storm/water based chase scene. However, this was decided to be too expensive, and was switched for a cheaper, and some say weaker ending. Nonetheless, in Nicholas Cage's final speech, he says "I keep thinking about that tunnel, and what would have happened if I'd drowned." This makes no sense, given that in the new ending he came nowhere near a tunnel or drowning.
Plot hole: After running from the pirates, the two castaways almost stumble off a cliff. Unless they were running backwards, I'm sure they would have seen the cliff coming for a while, because when the camera zooms out you can see clear terrain for at least 20 metres until the edge of the cliff.
Plot hole: The government would have no chance of hiding the existence of the comet for a year. Most comets are discovered when they are very faint, literally thousands of times fainter than Wolf-Beiderman when Leo found it. Long before the events in the film take place, probably even before the government itself would be notified, the comet would have been discovered, an orbit calculated, and people panicked. The whole premise of the first half of the movie is thus based on flawed logic.
Plot hole: Alain joins the Legion, goes through extensive training and eventually gets his photograph taken. That's how Galgani recognises him and sends two men to kill him. They arrive with a platoon at the fort just after Alain, Mackintosh and Luther. The photograph would have taken a while to get back to France and then the two men would have to go through the same training. So how do they both end up in the same fortress after they joined the legion long after Alain?
Plot hole: In the scene where Katrina is watching through Valek's eyes as he kills father Molina, Crow orders father Giteau to "find out where an old padre is missing". But Katrina never described father Molina, all she said was "He killed the priest". Crow could not have known the age of the man who was killed.
Plot hole: In the lobby of police headquarters, Danny Roman's lawyer tells him to make a deal with the prosecution. Danny turns to his wife Karen and tells her to wait in the car and he will be right back. Then he proceeds to go upstairs and overtake Niebaum's office. Much later when Chris Sabian is negotiating, Karen arrives on the scene wondering what's going on. How long was she waiting in the car? (00:28:35)
Plot hole: As the characters arrive at 'the Jar', Brill informs Dean that it is entirely cut off from the outside world (no communication lines or radio waves). Yet somehow he is able to access a Government database from this very location.
Plot hole: While planting the suicide gear in the bathroom before Buckley comes in, Cooper tells Josh to tie the rope into a noose as they go to hide in the shower. Josh replies that he doesn't even know how to tie a noose. He must be a quick study, because in the 45 seconds or so that it would have taken Buckley to relieve himself and wash his hands, Josh has tied a perfect noose. (01:03:55)
Plot hole: When Tarzan comes to the hotel to visit Jane, he overhears the bad guys threatening the hotel clerk into giving them Jane's room number. Tarzan then has time to go into the streets and study the hotel for a little while (coincidentally just when Jane happens to appear in her window), climb to the second story and through her window, have a romantic reunion with Jane and explain what is going on before the villains have managed to ascend the one stair from the lobby.
Plot hole: The kidnappers initially ask for a ransom of $50 million. $20 million in $20s, $20 million in $50s, and $10 million in $10s. This translates to a grand total of 2.4 million bills (pieces of paper, that is) Every bill of American currency is 2.61 inches wide, 6.14 inches long, and .0043 inches thick. This makes roughly 2,791 bills to form a 1 foot tall stack. This means that the 2.4 million bills would take up a space of 96 cubic feet (assuming they are packed as tightly as possible). Also, since 490 bills make 1 pound, the 2.4 million bills would weigh (interestingly enough) just over 2.4 tons. No way they can move it.
Plot hole: When Karen is at Moselle's apartment looking for Snoopy, we overhear Kenneth on the phone talking about some boxers who are going to fight. The first thing we hear is him clarifying that the fights were at the State Theater. The fights are always at the State Theater and they always go there to watch them, so it makes no sense for him to have said that, other than to subtly benefit the plot.