Audio problem: (May only apply to the original VHS release.) When Scar has Zazu locked up in a cage, Zazu mentions Mufasa's name and Scar yells at him, "What did you say?" Right before Scar's actual line, whilst Zazu is talking, you hear Scar's "What did you say?" line very faintly in the background, even though Zazu has not even mentioned Mufasa yet.
Audio problem: When Chris drives up in the truck while Selena is mowing the lawn, Selena asks what he got. While you hear "junk food" his mouth says something else.
Audio problem: An early scene in the movie has Chinese soldiers recruiting Tibetans to work on a secret project which they are told is a dam. As the scene ends, the sound of explosives draws everyone's eyes towards the mountains, where the explosions can be seen several miles in the distance. The sight and sound of these explosions take place simultaneously. Sound travels much slower than light. In reality, there should have been some delay before the sound of the explosions was heard.
Audio problem: When Nighthob and Teeny are talking to the Rockbiter near the beginning of the film, Teeny says to Nighthob "This could be serious", then turns to Rockbiter and calls out his name. Watch Teeny's mouth as he calls out "Rockbiter". You will see a very blatant editing mistake as Teeny is not actually saying 'Rockbiter", but is saying the next line that follows. (00:16:40)
Audio problem: Alexis confirms in a conversation with his brother that it's Valentine's day 2006, but if you watch his lips he says 2004.
Audio problem: At the climax of the film when the Turtles are about to face Shredder for the first time, Raphael says, "I got him" and then runs to fight. When Raphael falls to the ground, his pair of Sai hit the ground but make no noise. There should be a metallic sound against the rooftop. (01:19:00)
Audio problem: Jordan and Donnie are talking about Jordan's money. Jordan then says "technically 72 thousand last month. Something like that." When he says "something like that", the camera is very close to Jordan's head with Donnie in the background. You hear the words "something like that", but Jordan's mouth is not moving, it is closed. (00:23:00)