By the Skin and the Teeth - S1-E15
Continuity mistake: In the psych ward, the rubble over the manhole cover changes between the long and close shots. (00:29:20)
Visible crew/equipment: As the helicopter takes off at the start, the filming equipment is reflected. (00:02:00)
And Then There Were 7 - S1-E11
Revealing mistake: When Nick is shot by Quinn, a blood pack is briefly visible under his shirt. (00:13:20)
And Then There Were 7 - S1-E11
Visible crew/equipment: When Michael goes towards The Key carded room, a stage light is briefly reflected in the glass panel of the door. (00:11:40)
Riots, Drills and the Devil: Part 2 - S1-E7
Continuity mistake: When on his way to rescue Sarah, Michael hears a noise in the vent. When he stops he's completely in the dark but as the shot changes he's moved forward and is now illuminated. (00:08:30)
Riots, Drills and the Devil: Part 2 - S1-E7
Continuity mistake: When LJ's mum yells at him to go upstairs she is pointing with her right hand. When the shot changes she is no longer pointing. (00:18:25)
The Old Head - S1-E8
Visible crew/equipment: When Kellerman is in the car speaking to Vice President Reynolds, a light screen and equipment is reflected in his glasses. (00:09:30)
Riots, Drills and the Devil: Part 2 - S1-E7
Continuity mistake: The way Abruzzi holds Bob's ID after setting him free changes between shots. (00:38:10)
Visible crew/equipment: Alex finishes talking to his wife, looks outside, and in the fan you can see the face of one of the crew members.
Continuity mistake: Tweener is talking to his lover then has his arms up on his head, then the FBI catch him and tell him to put his hands up. (00:34:36)
Continuity mistake: The Key that falls out of the governor's pocket when Sara is trying to save him is not the same as the one she picks up. (00:24:00 - 00:25:00)
Audio problem: On the boat, Chaco comes up to DeJesus and asks what's up. When DeJesus answers in Spanish, what he says and his lips are unsynchronized. (00:15:00)
Continuity mistake: When Tweener goes to the house from the girl from Utah he has his hands on his head, then not. (00:34:40)
Good Fences - S3-E4
Other mistake: In this episode Nieves is killed by Bagwell. At the end of the episode his body is shown being collected by the gravedigger and guards. However, Nieves is still fully clothed. Everytime someone dies in Sona they are stripped of all possessions and clothes by other inmates.
Good Fences - S3-E4
Visible crew/equipment: When Whistler is walking to talk to Sofia for the first time, the camera shadow can be seen to move down the metal fence. (00:11:10)
Interference - S3-E5
Continuity mistake: When the guard leaves he is still holding the rifle scope in his left hand but in the next shot Schofield picks up the rifle scope from the floor.
Continuity mistake: At the end in Sona, Michael is walking down a corridor. He gets over halfway and spots a lad in a red top having taken drugs. After this we see Michael again and he's back at the start of the corridor. Note the door on screen left and the number of light fittings. (00:40:30)
Answer: Don Self actually worked with Whistler before he died. And Whistler with the bird book actually knew where Scylla was.