Continuity mistake: On the tombstone in the previous episode, Michael's date of death is 11.4.2005. But in this episode, when Linc goes to the graveyard to visit Michael's grave, his date of death is 11.4.2010. It is also a different grave from the original, as the original was in South America beside the beach, and here we are led to believe it is in New York. (00:50:50)
Factual error: In a number of episodes people are shown eating and drinking in the laboratories. For instance, in "Miss Willows' Regrets" Nick and Greg are seen eating fried chicken in the lab, and in "Overload" Sara eats a sandwich while watching Grissom experiment with her deli pickle. There are other examples. No reputable laboratory (which this is supposed to be) would allow its staff to eat or drink while in the lab. It is basic scientific protocol to prevent contamination of samples or the person picking up toxins on their food.
Character mistake: After the murder that takes place while the team is at the church meeting, they gather together to talk about narrowing down the suspect list to the people who didn't show up to the meeting. Spencer shows up with a stack of papers and says 18 suspects didn't show up. We then see his actor break character and almost laughs when he looks over at Ashley, whose actress too almost breaks character from laughing.
Continuity mistake: Right at the beginning of the episode a Cadillac Escalade gets stolen. The car is the newest model. The chase begins and the car is a new model right up to a scene when they crash into some other cars. That part was filmed with older model Cadillac. The damage is quite severe, but the chase continues again with the new model that has only one bit of damage - a mirror that has come apart.
Continuity mistake: Before the Roadhouse fire, Ash and Dean are talking on the phone. Ash looks at his watch, on his left hand, it says 8:10, and has a black dial/face. As Dean and Bobby go through the rubble, Dean identifies Ash by his watch. Still on his left hand, it is now upside down, evident by the crown of the watch (used to move the hands of the watch) which previously facing his hand, is now facing his elbow. Also, the dial/face of the watch is now silver instead of black. This is a different watch, and was inadvertently put on the burnt arm upside down.
Revealing mistake: During the fight between Garak and Worf near the end of the episode, a Jefferies tube door is knocked out of its frame to reveal the end of the set - a dark room with a wooden scaffold and various other pieces of equipment (slow-mo helpful but not required). (00:36:00)
Visible crew/equipment: When Mulder and Scully enter the abandoned mine through a doorway, the viewer can see at right in the distance a number of people sitting on a wall, and one crouching in front of the wall with what looks like a dog. They are sitting still, but there is still movement there. (00:16:00)
Continuity mistake: On the video of Ian supposedly killing Alison, we see her arm fall to the ground with her "Alison" bracelet visible. But in a later scene where Emily watches Ian put his bag in the athletics room, we cut back to the video and Alison's arm suddenly has a sleeve covering up her bracelet. When we see the video again later in the series, her bracelet is visible again.
Plot hole: Can't fault this massive plot hole to the adaptation, but to the source material; the culprit (forgetting the stupidity of writing an incriminating letter detailing the plan to murder someone, and put it in a desk he shares with her) since there are people outside the room that are about to enter, tears the letter in 3 neat vertical strips, rolls them, puts them in the vase on the mantlepiece, and then opens the side door to slip away...instead of simply pocketing the letter and going through that same door. Nobody was going to search him or anything and could have burned it, torn it into confetti, anything, later. It takes way way longer to do what he did, which needed him to stay there in the room increasing the chances of being found out. And of course he and his accomplice do not retrieve the letter after.