And Then There Were 7 - S1-E11
Continuity mistake: When Quinn falls in the well, he falls through and subsequently destroys the well cover. At the end of the episode when the Secret Service boys show up, an undamaged cover is lying next to the well, which Kellerman uses to cover it up. (00:29:30 - 00:38:30)
Continuity mistake: In the shot where Scofield and Whistler are clinging to the wire from the helicopter, one of the bad guys gets shot and falls out of the helicopter. He falls past the wire, but they're not hanging off it. (00:38:35)
Revealing mistake: When C-Note leaps out of the train, you can see that the man jumping out of the train is a stuntman. He is much chubbier than C-Note (wearing a life vest) and his face is completely different. (00:22:20)
Cute Poison - S1-E4
Revealing mistake: Near the end, when Michael is unscrewing the sink before kicking the wall in, watch his hands in the foreground while he is talking to Sucre. Just when Sucre says "But what you were doing up there in the infirmary." Michael starts using his fingers to take the bolt out. You can see that there is no bolt, just him turning air, with a mystery 'unscrewing' sound effect. (00:39:35)
Continuity mistake: When Steadman is watching the agent put the bags that contain the remains of Veronica Donovan into the trunk of the silver car, the license plate changes between shots. The first time we see the car, the plate reads "1029Q", the second time (close-up shot as the agent closes the trunk) it reads "9417X". (00:37:20)
Continuity mistake: After Lincoln and LJ have been recognized by the waitress, they speed off down a road. During their conversation in the car, whenever we see LJ from (his) right side, his hair is blowing in a strong draft, and is blown away from the temple. In all other shots, his hair is completely calm, and is hanging down and forward, covering his right temple completely. (00:13:50)
Riots, Drills and the Devil: Part 2 - S1-E7
Visible crew/equipment: In Riots, Drills and the Devil Part 2, when LJ's mom turns off the TV, the camera man's image can be seen in the glass next to the television. (00:18:20)
Continuity mistake: As the train is approaching the police road block, we get a shot behind the police cars right before the train hits them. At that point all the policemen are gone. In the next shot, the policemen are back by the police cars. (00:28:30)
Cute Poison - S1-E4
Continuity mistake: When Veronica is having coffee with Nick, she picks up her cup to take a sip and is holding it around the rim. When the shot changes she is holding it by the handle. (00:29:30)
Visible crew/equipment: After the bus driver has given Lincoln's description to the police, it cuts to Lincoln driving a car. The camera moves closely in to the car and you can see both the camera and a couple of crew members reflected in the window. (00:13:50)
First Down - S2-E4
Continuity mistake: When Abruzzi is shot, he falls backwards and lands with his head pointing towards the wall of the motel. Cut to the FBI agent, then back to Abruzzi, and he is now lying the complete opposite way, with his feet pointing towards the wall. (00:36:30)
Continuity mistake: When Kellerman orders Hale to give him his weapon, Kellerman pulls out his own weapon with his left hand. In the next shot, his gun is in his right hand, and he then transfers it back to his left. (00:36:45)
Continuity mistake: When Michael is sitting in the park he's staring at the front page of the newspaper. As the camera follows a man in the park you can see that Michael has opened to the midpages, but in the next shot Michael is looking at the front page again, before opening it another time. (00:02:00 - 00:02:30)
First Down - S2-E4
Continuity mistake: During the car chase in the beginning of the episode, Bellick's car swerves to avoid hitting a truck as they go over a bridge. The next shot is from in front of the cars, and in the background you can see the bridge and a stretch of road behind it, but the truck has vanished. (00:02:40)
English, Fitz or Percy - S1-E5
Continuity mistake: When Michael is supposed to be in Pope's office holding the support for the Taj Mahal so it didn't come unglued, Abruzzi placed the makeshift key in the lock of the door, allowing Michael to escape to get back with the other inmates. When Michael opens the door and it's unlocked, The Key is in the deadbolt. As he shuts the door behind him, The Key is in the lock of the door knob. (00:23:20)
Continuity mistake: This happens in the scene where Lisa is scolding LJ for getting arrested. When LJ says "I don't have a father", he is leaning on the table with his arms crossed. When the shot changes, his arms are uncrossed and in a completely different position. (00:22:25)
And Then There Were 7 - S1-E11
Continuity mistake: When chasing LJ through the woods, Quinn's wounds go from his right side to his left side and back. (00:29:10)
First Down - S2-E4
Continuity mistake: All throughout the car chase, the car Michael and Lincoln are in has a license plate on the front bumper. But after Bellick has forced their car off the road, the car makes a jump before hitting a tree, and while it is in mid-air you can see that the license plate has disappeared. (00:02:50)
Answer: Don Self actually worked with Whistler before he died. And Whistler with the bird book actually knew where Scylla was.