Continuity mistake: In the scene where the Pacific Courier Freight plane gets blown up, you can see that it is being towed alongside another plane, and some people standing/walking around next to it. In the next shot, where we see the camera moving closer and closer to the plane from the bus's perspective, the runway the plane was just being towed on is gone, as is the plane it was going past a moment ago along with the people. There was no time between shots for the plane to have been moved so far away. (01:30:35)
Revealing mistake: When Traven is walking back to his car before the first bus explodes, as the bus drives past him, you can see from the shadow it casts that the bus isn't driving straight on. It turns the corner behind his car. Obviously a prop bus is further down the street and that is the one that blows up in its place.GalahadFairlight
Audio problem: When the first bus blows up (the one that Bob was driving) you can hear the explosion before the bus actually blows up.
Continuity mistake: At the beginning of the movie we see Keanu Reeves taking Jeff Daniels "out of the equation" by shooting him in the leg. We realise it's a serious injury as he requires the use of a cane when receiving his medal. However later on in the movie when they move in on Dennis Hopper's home, which takes place the next day, Daniels is part of the assault team and has no cane, no limp and is obviously very mobile.
Continuity mistake: When Jack drives on the shoulder, honking his horn to let people know that he's coming, he's pressing on a silver ring, which is the horn, but in the next shot, it's gone. While the ring only covers half the wheel, as he's going almost entirely straight it should always be in the same position. (00:31:35)
Plot hole: Payne's finger prints would've been all over the elevator, on his shotgun, and near the area where he killed the security guard as he was never shown wearing gloves. Since he was a former police officer, I would assume his prints would've been on file with the FBI and in a multitude of databases. You would think they would've been able to identify him much earlier in the movie than they did by running the prints through all databases of finger prints.