Hone made aishite? Akane koi o fukuzatsu kossetsu - S1-E5
Plot hole: Dr. Tofu is able to tell that Ranma was hit by a softball (he says something about the marks like he actually sees them), but Ranma's wound is still covered by the bandage, that he'll remove in the next episode. This is linked to a larger mistake in the following episode. (00:19:55)
Farewell My Beloved Witch - S1-E3
Plot hole: Lupin was captured by chance, and he did not plan for that, nor he seemed to have previous knowledge of Stern's appearance, but he escapes regardless using a Mission Impossible-like perfect mask of him. He also somehow kept his own blazer, tie and shoes underneath the uniform and boots he stole and wore. (00:16:00)
Hiren Lake Legend Murder Case: File 3 - S1-E6
Plot hole: The plan of the killer relies on a couple of pretty strong coincidences, such as the fact that they wouldn't realise their common link (he knows nothing about what happened on the cruise, so he couldn't know that they all wouldn't realise they have met before) and the fact that the boat is discovered at the perfect time for him to commit murder (on someone who wasn't part of the trip, but is willing to join him).
The Hong Kong Kowloon Treasure Murder Case File 1 - S1-E1
Plot hole: The plot of the four-parter is complete nonsense even for a kid show. It is tied together by unbelievable pure coincidences; Miyuki is the perfect doppelganger of a missing model, Kindaichi randomly bumps into a high school mate who just happened to be in HK as well (!), and they both equally randomly (so they think) bump into the model who was just chilling on a park bench (so much for disappearing!), he befriends the son of the victim from 20 years before.
Idol Curiosity/Home Is Where the Hurt Is/Aw, Shucks! - S1-E9
Plot hole: Idol Curiosity: When the ship is dragging Russell through the water by his intestines, Russell gets launched in the air by a coral reef, then he goes through a ring of fire. In order for this to have happened, the ship itself would have had to go through the ring, which is very impossible. (00:04:19)
Plot hole: When Chutora and Kurotora, imprisoned in a mountain temple, see Sniper, they immediately recognise him, even though they have never seen him in the series.
Plot hole: Ezra escapes from the Ghost crew through the ship's ducts. When the ship comes under attack from TIE fighters, he eventually falls out and into the nose gun turret. However, that turret is directly connected to the cockpit. There is no duct where he fell for him to fall out of.
Plot hole: After discovering the cards tossed into the ocean at the docks, Miss Dorothy goes to Jaden's dorm to alert him of this. There was no real reason for her to go to him, seeing as how she had no idea if this incident was tied to him specifically. (00:09:05)
Plot hole: The Mad Scientist's lair is on the top of a tall pointy mountain with no real flat areas. But Lois is somehow able to land her 1930's-1940's era propeller plane on the top of this mountain with no runways or flats for her to come to a stop on from flying. Which is physically impossible. (00:04:45)
Invasion of the Punk Frogs - S2-E8
Plot hole: Shredder meets the frogs for the first time and gives them clothes using the holographic projector. The frogs continue to wear the same clothes for the rest of the episode, even without Shredder being around.
Plot hole: This was the first episode of the series and we see that the rangers are unable to figure out how to properly operate their zords; but in Origins Part 1 (which takes place prior to this) they have no issues with the zords at all.
Plot hole: Cleveland never tells his friends where Cecilia lives. Yet Lester is somehow able to call Immigration & Customs Enforcement and direct them to Cecilia's house. (00:14:05 - 00:15:10)
The Muh-Muh-Muh-Murder - S1-E25
Plot hole: Daffy isn't able to escape Porky's house until he gets the keys, but later it is revealed that the reason he couldn't get out was because he was too weak to open the door. If that was the case, the keys shouldn't have been able to help him get out.
Espa Roba: The ESP Duelist - Part 1 - S2-E9
Plot hole: Joey attempts to summon Giltia the D Knight, but is unable to because it is a Level 5 monster and monsters with that are at least Level 5 require the player to sacrifice one of their monsters that are already on the field. This is a new rule that Kaiba implemented as part of the tournament which Joey didn't know about, but in the previous episode, he watched Yugi sacrifice a monster to summon Summoned Skull, so he should have known this. (00:06:10)
The New Kid - S2-E7
Plot hole: In the season two episode 'The New Kid,' Daria and Jane are discussing The New Kid in gym class when a girl takes a nasty spill from a trampoline. Later, Daria and The New Kid are heard remarking about photos taken of that particular fall despite there having been no photographers present.
Plot hole: During Ryder's report, as Bruce and company watch it on TV, the camera suddenly zooms in on Joker standing on a catwalk above Ryder, and none of the crew, especially not the camera man who caught the villain, makes a comment about this. They may have thought the Joker (or rather an impersonator) was perhaps a surprise gag in the show, but since this is supposed to be a serious documentary report, it is still strange that they wouldn't point it out.
Into the Mouth of Evil - S2-E23
Plot hole: While fleeing the guru's disciples through a narrow side street, Jackie gets cut off by the van driven by Dr. Jamba and associates, stun-sprayed in the face, and then loaded into the van. But with three brutish-looking guys being so close to their quarry, the real crooks can take the time for dragging Jackie around to the back door instead of loading him through the side doors?
Plot hole: Why would Danger Mouse go on the roller coaster at the end without seeing Greenback go on it first? Greenback went first in the ghost train. It also doesn't make sense that Danger Mouse would go on it when Penfold pretty much tells him flat out that it IS a trap.