Other mistake: Carrie the assistant brings Lisbon and Jane to Stutzer's office. She swipes her card to open the door. However, she does this upside down, swiping the bar-code instead of the black magnetic strip, on which she is holding. (00:09:30)
Red Menace - S2-E4
Continuity mistake: S02E04 - Red Menace. Jane is teaching the victim's son how to drive. His seat belt is alternatively fastened and unfastened.
Red Hair and Silver Tape - S1-E2
Continuity mistake: When Jane speaks to the owners of the restaurant, the female owner is writing something and also has a drink. She takes the drink with the pen in the same hand. When the shots changes, the pen is no longer in her hand. The shot goes back to the original position and the pen appears again. (00:09:35)
Red Hair and Silver Tape - S1-E2
Continuity mistake: After examining Melanie's body but before jumping out of the ditch, Lisbon takes off the rubber glove from her right hand. In the next shot, the glove is back on. (00:01:40)
Revealing mistake: At the very beginning, there's a square piece of board on the dead body's back, on which to support the knife.
Continuity mistake: Lisbon has just returned from giving a presentation at the local school. She sits down at her desk, picks up two sheets of paper, and holds them with both hands. In the next shot, she's only holding one sheet with just her right hand. (00:01:25)
Continuity mistake: Dale Blakely punches Patrick in the nose for talking to his wife. In pain, Patrick first holds his nose with his right hand. Cut and it's his left hand. The hands alternate throughout the scene. (00:28:45)
Continuity mistake: The victim's father comes face to face with Flipper at CBI and he lunges towards Flipper. Lisbon stops him. At first her right hand is on his left shoulder. Cut to the shot from behind, the same hand is now under his left armpit.
Continuity mistake: Lisbon is telling the CDC agent that the scientist's death is a homicide. The agent has an ear piece in his left ear in close-up shots. In all other shots, the piece isn't in his ear.
Continuity mistake: This happens right at the very end at the hotel room in Mexico. Jane and Lisbon are sitting on the bed and the cellphone rings. It's Red John calling. There's a beer bottle next to the phone on a round table. At first the label faces towards the middle of the table. When Jane picks the phone up, the label now faces the other way. (00:43:20)
Continuity mistake: At the end, Lisbon gives Christine's father a card and tells him to get help for his alcoholism. The way she holds the card differs between shots.