Plot hole: To identify the owner of a severed leg, Pride asks Loretta if she can guesstimate the body's general build by the foot's boot size. A much simpler way would be to swab for blood where the leg was severed and run it through the military DNA database.
The White Mountains: November, 2089 AD - S1-E13
Plot hole: The main characters are being pursued by Tripods, mind controlling alien machines. My question is, if the Tripods can turn humans into 1600's puppets, complete with foxhunts, why don't they make some of said mind-controlled humans help with the pursuit?
Plot hole: Although William Lewis burns his fingertips in an attempt to avoid identification, the Special Victims Unit could have identified him early on by examining the remaining unburned area of Lewis' hands, and in good police procedure still record the newly scarred fingerprints, as these new scars actually make his fingerprints more unique. His scarred fingerprints would still be at Alice's apartment crime scene, and during the trial at the end of the episode the prosecution would still have a strong argument for placing Lewis at Alice's apartment, even if the DNA evidence is thrown out because of alleged cross contamination.
The Case of the Deadly Toy - S2-E27
Plot hole: Claire Allison spends the night in an upstairs bedroom in the Jennings' home. In the middle of the night, she opens a walk-in closet to get another blanket and finds a small printing press. Later in the day, Claire returns to the home, accompanied by Perry Mason, who tells Mr. Jennings that Claire has received threatening letters from Mrs. Jennings' former husband, who still has a key to the Jennings' home, and the printing press may have been used to address the envelopes. Mr. Jennings says, "We'd better investigate" and immediately goes upstairs and opens the closet, even though neither Claire nor Perry Mason said where Claire saw the printing press.
Plot hole: The nuclear explosion is on Liberty Island, a small yield, but nonetheless big enough to move an enormous amount of water towards the coasts on all sides. When we see Sertrakian and the others at the harbor no water is heading their way - they should be washed away by it. (00:37:30 - 00:38:45)
The Night of the Raven - S2-E3
Plot hole: Antoinette is making miniature clothes for the soon-to-be shrunken West, but when West drinks the antidote to make him normal-sized, he is wearing the same clothes which would have been shredded as he grew back to normal size.
Plot hole: I believe in the very first episode, during the flashback when Mick remembers rescuing Beth and killing Coraline, we see him stab her with a wooden stake, which is supposed to paralyze a vampire, as said in the "Dr. Feel Good" episode. However when Mick looks back with Beth in his arms, Coraline suddenly gets up and watches him leave while burning to "death." This is simply not possible; in the "Dr. Feel Good" episode, Mick could not release the stake himself and asked Beth to do it. This also happened in the episode when Josef was staked by the hit man that was hired to kill him, (in the episode where we meet the woman, Sarah I believe, that he accidentally put into a coma after attempting to turn her). Again, Josef was unable to remove the stake himself and Mick had to do it for him, so there is absolutely no way Coraline would be watching Mick and Beth leave; she would still be on the ground possibly burning to death.
Plot hole: The plot hinges on Kimmy finding evidence against Pastor Wayne inside of the bunker, which she ends up doing. But there's absolutely no way the police didn't thoroughly comb the bunker for evidence after discovering it. In fact, it looks like it's barely been touched in the several months that have passed. Yes, the show has a sort-of whimsical "cartoon" logic... But even in that way, it makes no sense whatsoever.
Plot hole: They need at least 12 magnets to make it work, Paige collected 11. (00:21:00 - 00:22:00)
Plot hole: In series 5 episode 13 where Jim Fenner frames Karen Betts, the CCTV footage shows this to be July 2003. Yvonne Atkins is killed a few episodes later. In season 7 episode 10 it is said to the be the 1 year anniversary of Yvonne's death, placing this as sometime after July 2004, yet Jim Fenner's tombstone shows a death date of 12th July 2005. In series 7 episode 1 Tina O'Kane sets fire to a clothes shop and is sent to Larkhall, where in series 8 episode 7 it is said she has served 4 months on remand and set free. But in series 7 episode 11, Neil Grayling tells police that Jim Fenner has only been in the post for a few months. The time periods of all of these events cannot be reconciled.
The Book of Blood: Chapter Two: The Perdi - S2-E6
Plot hole: When announcing the 14 deaths, they make a generic statement to the friends and family of everyone in the pods, without first telling the affected families directly?! There's no way this would be dealt with like that - not least as they all then seem shocked that the parents start a riot/panic about whether their children are dead or not. Anyone with half a brain cell would have seen that coming a mile off. Not to mention that later on we discover one of the parents STILL hasn't been told if his daughter's alive or not. If this was a coverup or otherwise secret they wouldn't have said anything - there's no reason to announce the deaths but not clarify who died.
Lidar + Rogues + Duty - S3-E16
Plot hole: Riley's father Ellwood shows up unannounced at Phoenix headquarters. The address for the Phoenix Foundation Headquarters is classified, as is Riley's job. How did he know where to go? (00:22:10)
Plot hole: Cadmus sets a brain-controlled Connor loose in public, without apparently remotely considering the possibility that anything might go wrong. When he regains control all they've got is a few goons onsite armed with regular ammunition - what did they think that would achieve? They know exactly what he's capable of. Either have kryptonite ammo or don't bother having anyone there at all.
The Countess - S1-E4
Plot hole: Rockford and Carl Brego are punching and kicking each other on the beach. Someone shoots him down with a rifle. The INSTANT Rockford goes to check out if he's still breathing, two people randomly happen to walk on him popping over from behind a rock as they were having a super casual and amused chat, but see Rockford by the shirtless brute and make a horrified face. Later in the episode the two identify Rockford and say that it looked like the two were fighting. Their facial expressions at the time don't make sense as depicted. Even if we assume that they did not see anything at all and they played it up/filled the blanks in their mind later, the two are not deaf and yet they were not perturbed or curious in the slightest after the loud bang of a gunshot. The way the scene was shot, the only thing tipping them off about anything was seeing Rockford over the corpse (which had barely a small dot of blood visible at the time and would hardly tip anyone off at first sight). (00:18:45)
The Spores - S2-E7
Plot hole: Hal and Roy could not open the spore case with an electric power drill, but later a married couple pops it open with a hammer and chisel, then much later some children acquire the case and easily open it.