Destiny of the Daleks - S17-E1
Factual error: Davros comments that, between them, The Daleks are carrying half a megaton of explosives - in other words, roughly twenty-five times more explosive force than the Hiroshima or Nagasaki bombs. An explosion of that size should cause enormous destruction (vaporizing everything within roughly two kilometers), yet when the Doctor detonates them they explode with about as much power as a small stick of dynamite each.
Destiny of the Daleks - S17-E1
Revealing mistake: Right after Davros yells "The Daleks will rule the universe," in Episode 3, one of the Dalek operators accidentally starts to lift the top off his Dalek before the scene ends. (00:17:35)
Destiny of the Daleks - S17-E1
Revealing mistake: When the Doctor and his companion are running past explosions in the sand, you can see the scrape marks from where the effects team covered up the holes containing the charges. (00:13:00)
Destiny of the Daleks - S17-E1
Plot hole: The Daleks spend a lot of time and effort mining down to where Davros is, despite the fact that there is a window on that level and Davros is on the ground floor.
Destiny of the Daleks - S17-E1
Deliberate mistake: The shot of the alien spacecraft flying in the sky is the same in episode 4 as in episode 1, only it's reversed. The taking off and landing are the same too, except smoke and rubble have been added.
Destiny of the Daleks - S17-E1
Revealing mistake: In episode one, when the Doctor and his companion hear rumbling and the ground moves beneath their feet, when they step away you can see that they are standing on different ground than before, and it's not shaking. (00:08:00)
Answer: It was never destroyed on-screen; it was intact at the end of the TV movie, and destroyed by the start of the 2005 series. It was destroyed in the novel "The Ancestor Cell," but in a completely different manner to what happened in the series.
DaveJB