Continuity mistake: In the scene where Jonathan picks up the scarab, it breaks open and the beetle inside starts to crawl under his skin. We see Brendan Fraser tear Jonathan's shirt and cut the beetle out of him. However, in the very next scene, we see Jonathan walking into the temple, his shirt is intact and there is no blood to be seen. (01:37:05 - 01:38:30)
Continuity mistake: In the scene in the library, when Evie is putting back the books. She leans over to put the book back, but it falls to the ground and she is balancing on the ladder. When the camera cuts back to show the whole ladder, the book is nowhere to be found on the floor. (00:13:00)
Continuity mistake: In the scene where Imhotep's priests first pop up, Jonathan is on Rick's left, and the guy in black is on his right. But in that split-second shot that shows them starting to fire, they are on the opposite sides. [In the director's commentary he does mention this but says it's because they had to cut some scenes out due to time, still a mistake but has a reason.] (01:39:20)
Continuity mistake: On the DVD version of the movie there are some deleted scenes - one would have explained two mistakes that occurred towards the end of the movie. Mistake one was that there was a hole in the ground when Jonathan and Rick are at the base of the statue of Horus. You can see the hole clearly when Rick lights the TNT - but without the missing scene there is absolutely no reason for that hole to be there and it just sort of appears. (01:42:30)
Continuity mistake: In the scene where Evie & her brother meet Brendan's character for the first time, the guards bring Brendan out with both arms shackled together in front. After he kisses Evie the guards pull him away and one of his hands is suddenly free - he quickly tucks it behind his back as he's dragged off. (00:19:35 - 00:21:15)
Continuity mistake: Ardeth Bay removes the Lewis gun from Winston's plane after it crashes in the desert. If you look at the gun, it has the correct 97 round drum (it's really noticeably thick) with a leather carrying handle on top and no paint marks on it - this is correct for aircraft use. Aside from the fact we never see Ardeth Bay remove any spare magazines for it (which would also have been of the 97 round variety), which would have left the gun with little if any ammunition after shooting at the wall of sand, by the time they all arrive in the treasure room, the magazine suddenly changes to the 47 round variety (thinner than the 97 round magazine), which does not have the leather carrying handle, and has the painted marking on the top of it to enable the magazine to be more easily changed at night.
Continuity mistake: When Evie wakes up with the rat on her, she rolls over and sees Anck-Su-Namun's body and screams. A split second before the camera cuts, you can see a large crack form in the top-left corner of the table Anck is on. The next time you see the table, the crack is gone. Clearly, it was unintentional damage done to the set that was later fixed. (This mistake has been fixed in the 4K version, which reverses the shot right before the crack forms, but it's still visible in older DVD/Blu-Ray versions).
Continuity mistake: In the scene where the Americans are running from the mummy in the cave, the American with the glasses falls to the ground and his glasses fall off. You see the glasses fall in front of him and after he says "My glasses" you see that another pair of glasses are being thrown from behind him near his right shoulder. (01:01:20)
Continuity mistake: In the scene where Imhotep's sarcophagus is opened: Rick and Jonathan stand the sarcophagus up against the wall, and Evie steps a few paces away and stands in front of it. Then the "lid" falls on the floor, where Evie was standing. Then Evie approaches the juicy corpse of Imhotep from an angle. Next she is seen stood directly in front of him, where the lid should be, yet the lid has mysteriously disappeared.
Continuity mistake: When the two teams are racing towards the city of the dead on horses and camels you can see that Evy's knees are exposed as she passes Rick, yet in the next shot they are completely covered by her dress. (00:38:55)
Continuity mistake: When the biplane dives from the sandstorm created by the mummy, it shows Evelyn looking towards the plane, with the city of the dead behind her. The plane is seen, from her viewpoint, to be flying away when it crashes. However, after the plane sinks O'Connell and his friends walk in the same direction that the plane was flying, presumably AWAY from the city of the dead but the camera shows them walking towards it.
Continuity mistake: During the scenes when Rick, Evelyn, and Jonathan are walking through the passageways by torchlight, Rick's leather wrist bracer disappears and reappears.
Continuity mistake: When Imhotep's priests break out of the ground, we see a shot of Ardeth, Jonathan and O'Connell starting to shoot them. It flashes back to the priests and then back to the trio and we only THEN see Jonathan reach over and grab some revolvers from beside O'Connell to start shooting.
Continuity mistake: Just after the bug has crawled up into the guy's head, you come back to where Rick and the others are. You see that Rick is wearing those wrist bracers. When they hear a scream they go running. In the next shot Rick does not have the bracers. (00:47:40)
Continuity mistake: After the scarab enters his body, Jonathan contorts his arm in pain/reaction giving a view of his palm, through which the scarab entered. But there is no visible wound, blood, or any other sign of entry for the scarab to have gotten in. Also there is no visible blood when Rick stabs Jonathan to get the scarab out.
Continuity mistake: On the boat, as Rick is checking his weaponry, he cocks his 45 and puts a magazine in. Hearing a noise, he walks over to deck cargo and pulls Benny out. He then places the 45 against Benny's chest and threatens him. The 45 is no longer cocked.
Continuity mistake: When Rick finds Beni in the office, after Beni says "I am immune", Rick slams him into a pile of boxes, sending stuff flying. Nothing is visible behind Beni's head, just a sheet of paper at neck level. Then after Rick says "immune from what?" we cut to a different angle - boxes are now piled much higher behind Beni, and there's a bit of paper resting on his hat. (01:15:00)
Continuity mistake: In the scene when they are driving through town trying to escape the mob, the car crashes, and you can see that its lights are on. When Rick helps Evie out of the car, its lights are off. A few seconds later, you can see in the background that its lights are on again. (01:27:20)
Continuity mistake: Whenever a scarab crawls out of its "blue gold" shelling, it leaves the shelling behind. At the end of the film when Jonathan picks one up and the scarab crawls inside of him, he begins to scream and you can see the shell still on his hand yet in the next shot, he throws his hands up yet no shell is thrown away or even seen on the ground. (01:37:00)