Continuity mistake: During the song "You Can Fly", Michael picks up Tinkerbell because he wants to make Nana fly. When he does so, she is right side up. However, in the next shot when he shakes her over Nana, she is upside down. He does not turn his fist in any way.
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Continuity mistake: In the scene where the crocodile attacks Hook at Skull Rock, there is a shot where the croc bites Hook's left foot and the shoe comes off, leaving Hook's left foot bare. In the shot with Hook wrapped around the croc's snout, the shoe is back on Hook's left foot and his right foot is bare.