Deliberate mistake: The kid who falls into Niagara Falls spends 28 seconds falling before Superman catches him. Niagara Falls is 51 meters in total height. Considering how fast something falls, the kid should have hit the water long before Superman ever entered the scene. (00:39:30 - 00:40:00)
Deliberate mistake: When the villains rampage the White House, the flag's base remains on the ceiling, and the flag pole falls inside the house. So the final scene with Superman carrying the flag and its base as if it had been previously stolen or destroyed, is nonsensical, but it looks very patriotic indeed.
Deliberate mistake: French officers and firemen speak in English between them.
Deliberate mistake: Luthor and Teschmaker visit the North Pole protecting themselves against the cold. Lois manages to wander around with a mere, but sexy, shirt.
Answer: In the theatrical cut, nobody really knows why the green crystal restored his powers. However if you watch the Richard Donner cut, it is explained that the green crystal is a communication device that helps Superman talks to the residual essence/spirit/ghost of his father Jor-El. Before he died, Jor-El gave the crystal to his son. Jor-El anticipated that Kal-El might give up his powers, and he also anticipated that Zod might eventually escape the Phantom Zone, so Jor-El lets his son absorb the leftover energy of his spirit, thus restoring all his Kryptonian powers.
Matt Van Gogh