Plot hole: During the later parts of this movie there is much talk about 'continental displacement' and this appears to be happening in the film. The Earth's crust is falling apart because of the heating of the inner core, and all the cities seems to be falling apart since the ground can no longer hold them. When our cast finds themselves surprised to be already over China when they figured to be over the ocean, it is explained that Asia has actually moved from where it was. If this phenomenon is taking place globally, how come the monks in China don't seem to have been disturbed at all? In fact the bell the monk rings as the ocean approaches hasn't even been shaken. The arks are built in between the mountains, but the mountains are apparently fine. Shouldn't they be falling like the rest of the crust?
Plot hole: Inmediately after Jamie Foxx finds the bomb in the city hall, and he says, "We don't tell the mayor anything", we see Gerard Butler arriving to his property next to the prison, and finally he enters his jail cell. So, in the time between Gerard Butler's arrival to the property and his entrance to the jail cell, Jamie Foxx thought about a plan, picked up the bomb, passed through the traffic and security checkpoints, talked to the warden to get access to the prison, entered solitary, handcuffed the bomb, and still had time to wait for Gerard Butler's arrival.
Plot hole: Simmons stands outside the 'The Monastery' at Petra (not to be confused with 'The Al Kazneh' at Petra where Indiana Jones and the Last Crusade was filmed) and looks at the horizon, and he is able to see the Air Force landing with Optimus by the pyramids. It then appears to take them mere minutes to drive over there. This is outright laughable, even accepting that they make the trip in an alien robot car. Petra and Cairo are separated by hundreds of miles of desert, not to mention Israel being between Egypt and Jordan.
Plot hole: Ben demonstrates for the FBI that he has not only invented gear that allows animals to speak English, but trained ordinary rodents to a level on par with Navy Seals. The FBI laughs at him and cuts his funding, a plot hammer so G-Force can escape and save the day. Are they kidding!?! Even if the info G-force brought back is wrong, Ben has created agents that can repeatedly infiltrate almost literally any place on Earth. No government agency would pass up such a huge intelligence gathering tool.
Plot hole: After the scene at the Houses of Parliament where Irene Adler escapes through the sewer from the clutches of Lord Blackwood, she suddenly appears at Tower Bridge, about 3 miles away. Even assuming she ran there and the journey was skipped, going there makes zero sense. It slows her down, leaves her exposed and limits her exit points - she's got all of London to escape into! (01:48:00)
Plot hole: Despite their awareness of the red matter and the power of the singularity, no one on the bridge had the common sense to suggest pulling back to a safe distance. Nero had already refused their assistance so there was no need to stay so close to the singularity. And when a black hole was created inside Vulcan, an officer mentioned they had to reach minimum safe distance, so they know what they need to do, but no-one does it. (01:00:30)
Plot hole: During the scene where Ramus is shutting down the power in the tunnel, he shoots off a padlock with a gun with one shot. Aside from being quite dangerous at close range, both Mythbusters and Masterlock have proven this cannot be done with an ordinary gun and ammo, and certainly would be unlikely with one try. I know this used to be run-of-the-mill stuff in movies, but it does not fit modern research that has been done concerning the strength of padlocks vs using guns to open them.
Plot hole: At the concert in Crowley Corners, Miley announces that she will sing a new song she just wrote, "The Climb." Somehow the band and the backup singers all know the words and the music.
Plot hole: So he needed the help of a big strong burly guy to flip the safe with the body end over end to the pit but he somehow was able to easily get it out of his basement and into the back of his car by himself?
Plot hole: A detective would never be assigned to a suicide scene, since suicide is not a crime. A detective would only be assigned if the suicide is actually found as a murder. Nor would a detective be assigned to find out about a potential sexual relationship or affair unless it involves a crime.
Plot hole: The super warriors that are given the venom are supposed to be fearless and without self preservation. However, during the scene in the Sahara base when they are helping to get the warheads back from the Joes, one of those men screams out in fear as he falls down the shaft, which makes no sense as the one guy did not scream in frustration when he was bitten earlier by the deadly snake and knew he would die. (00:40:20)
Plot hole: Property is destroyed, museum windows are crashed through, a giant octopus splashes about in the National Mall's reflecting pool, and even the statue of Honest Abe at the Lincoln Memorial comes alive. With all this occurring, not a single D.C. resident seems to notice and nary a single police officer turns up to investigate the goings-on.
Plot hole: Towards the end, Patrick takes the 5kt bomb into a helicopter and climbs it away to safety. The problem with that is that the helicopters have a rather low rate of climb - ~10 m/s for military helicopters, less than that for civilian ones. This is the rate of climb at low altitudes, and it is with altitude. He had less than 5 minutes to climb, which would put the bomb at most 3000 meters above the city, and more realistically, one tenth that - just about the optimum height for the bomb to inflict major damage on the Vatican city and the center of Rome.
Plot hole: Throughout the first half of the movie the focus is to locate and find David Park. It is believed this will lead them to Bragga and they can arrest him. However, later in the movie it is revealed that Letty was working with the FBI and was killed running drugs for Bragga. This means that the whole storyline to find Park was useless because they already knew how to get people inside. (00:18:55)