Other mistake: Ka-Zar refers to Xavier by name despite only having just met him and Xavier never telling him his name. He even asked Xavier who he was only moments before. (00:09:19 - 00:10:17)
Other mistake: When Magneto is asking how the Savage Land mutates were able to infiltrate his citadel, Amphibious tells him it's because Mr. Sinister long ago found his secret passage. The room they are in leads to a balcony, and has no door sealing off the balcony. In a world of superpowered beings, some of whom can fly, it wouldn't take much effort to get into a building that isn't closed off. Finding a secret passage from the ground level would be unnecessary. (00:15:00)
Other mistake: After Magneto says "Trust me, you'd rather not know," a hole appears in his pants around his right hamstring and then quickly disappears. (00:02:50)
Other mistake: When Xavier asks Magneto how much further they have to reach the top of the cliff, Magneto tells him he would rather not know, suggesting they still have a long way to go. However, in the wideshot of the sky-riders flying in to attack the two, you can see Magneto is about three times the length of his own body from the top, and according to the book "X-Men: The Art and Making of the Animated Series," Magneto is 6 feet tall. This means he is only about 20 feet, give or take, from the top, which isn't all that far in terms of climbing a cliff. (00:02:44)
