Earthshock - S19-E6
Plot hole: The freighter traveling back in time makes no sense. According to Adric, the Cybermen's computer is responsible, yet the Cybermen possess no such technology; their machine's task was simply to navigate the freighter towards Earth. The idea that time travel could happen by accident is also absurd. (01:30:05)
Earthshock - S19-E6
Plot hole: The Cyber Leader states that he needs the Doctor to pilot the TARDIS. It makes no sense then, that he would try to kill the Doctor once inside, and before the TARDIS had landed in a safe place. (01:33:55)
Answer: It was never destroyed on-screen; it was intact at the end of the TV movie, and destroyed by the start of the 2005 series. It was destroyed in the novel "The Ancestor Cell," but in a completely different manner to what happened in the series.
DaveJB