Continuity mistake: Lily and Marshall mention that they've been using the same toothbrush ever since they've been together, but in the 14th episode of the 1st season, "Zip, zip, zip", Marshall and Lily are simultaneously brushing their teeth with a tooth brush each (before Ted and Victoria get home).
Continuity mistake: In season 5 episode 8, Marshall and Ted are playing on an Xbox 360 Console. If you look carefully, you see that Ted's Xbox controller has no batteries in it, yet he is playing the game with Marshall, and then a few scenes change and so do the batteries. Scene 1, 12 minutes and 23 seconds: Marshall's remotes has a battery in while Ted's is out. Scene 2, 12m 40s: Marshall's Xbox control has no battery in. Scene 3, 12m 51s: Marshall's battery is back in the controller. Scene 4, 12m 58s: Marshall's battery is out again. Scene 5, 13m 44s:Marshall's battery is back in.
Continuity mistake: In the 7th episode of Season 5, the scenes when the "Storm-Trooper" (actually, a robot) passes by the window do not match. The first time we see it, from the outside, as soon as he passes, Robin notices him and points towards him, but the second time, from the inside, she doesn't point at him.