Plot hole: The Jupiter 2 crew is duplicated; however, the aliens had never seen Penny (or Judy I think). How can they be duplicated? The aliens don't have ability to know who were there, or they wouldn't have questioned Smith about the crew. Also, they do not know Smith and Will are hiding. So, they don't arm to have any special power to know beyond what they actually observe.
Other mistake: When Don and Dr Smith are stealing Sesmar's control unit, look closely at the base of the electronic arch - Raddion is hidden from sight but the careful eye will see his golden feet.
Dr. Smith: Oh, the pain, the pain.
The Great Vegetable Rebellion - S3-E23
Trivia: Due to their uncontrollable laughter during filming of the infamous "Vegetable Rebellion" episode, Guy Williams and June Lockhart were written out of the next two episodes.