Plot hole: The Jupiter 2 crew is duplicated; however, the aliens had never seen Penny (or Judy I think). How can they be duplicated? The aliens don't have ability to know who were there, or they wouldn't have questioned Smith about the crew. Also, they do not know Smith and Will are hiding. So, they don't arm to have any special power to know beyond what they actually observe.
Visit to a Hostile Planet - S3-E2
Continuity mistake: When the guy shoots the Robinson Robot it leaves a big bullet hole on the front. In the next shot we see the Robinson Robot turning around and the bullet hole is gone.
Robot: Danger, Will Robinson! Danger.
The Great Vegetable Rebellion - S3-E23
Trivia: Due to their uncontrollable laughter during filming of the infamous "Vegetable Rebellion" episode, Guy Williams and June Lockhart were written out of the next two episodes.