Mr. Monk Is on the Run (2) - S6-E16
Audio problem: Toward the end of the episode, Mr. Monk runs out to stop the Governor's car before it crosses the banner and blows up. The first time that he yells out that "There is a bomb", you can see that Mr. Monk's mouth is not moving to say those words.
Answer: Stottlemeyer was already upset after the phone call. He was trying to get "Kevin" (who would have to be a judge, but no further character information is given) to issue a restraining order with no evidence of needing one, except that Adrian Monk said she needs one. Kevin said he would need to "sleep on it." So it's clear they've been trying to provide protection and unable to get the results they need, which seems to be based on no one trusting Monk the way Stottlemeyer does. He's just angry that they failed to protect Linda despite all their work. Although it does feel like a scene was cut, or altered, from the show that shows the futile attempts to protect Linda which built up to his outrage.
Bishop73