Continuity mistake: Monk and Natalie question the landlady, Sylvia, about the missing guest. Every time the camera angle changes, Sylvia's arms change from being crossed in front of her to hanging loosely at her sides.
Continuity mistake: When Natalie and Al are struggling, the gun lands on the table and there's a basket of corks. Somehow when Al gets the gun, the basket is tipped over and the corks are on the table. But after Monk hits Al, the corks are all back in the basket, which is upright.
Continuity mistake: When Monk and Al are sitting to drink wine, Al grabs his bottle with one hand to pour the wine and the other hand is hanging down to his side. In the next shot, as he's pouring the wine, he's holding the glass with the other hand. In the next shot, his hand is by his side again.
Answer: Stottlemeyer was already upset after the phone call. He was trying to get "Kevin" (who would have to be a judge, but no further character information is given) to issue a restraining order with no evidence of needing one, except that Adrian Monk said she needs one. Kevin said he would need to "sleep on it." So it's clear they've been trying to provide protection and unable to get the results they need, which seems to be based on no one trusting Monk the way Stottlemeyer does. He's just angry that they failed to protect Linda despite all their work. Although it does feel like a scene was cut, or altered, from the show that shows the futile attempts to protect Linda which built up to his outrage.
Bishop73