Other mistake: When Lois and Clark leave the Fortress, the car is driving in the wrong lane. This is due to the fact that the shot belongs to a reused scene from the first movie, where an empty car was remotely driven by Lex, who changed lanes all the time.
Factual error: When the Krypton criminals are on the moon, they speak both to each other and the astronauts, something that's impossible to do in space where there's no sound.
Continuity mistake: When the villains arrive at the Daily Planet, the furniture, decor, and buildings in the background change between shots.
Continuity mistake: After the Metropolis fight, the villains return to Perry's office. In the close-up, the whole background changes: the buildings, the debris around, and even a column and a broken blind appear behind Non.
Revealing mistake: All of the movements of both people and objects on the moon are played in slower speed to simulate the Moon's gravity, except for the last scene where Zod grabs the oxygen tube and it falls on the ground at normal speed.
Continuity mistake: Before Non breaks the table in two, the phones are lying next to the edge. When he raises his fist, the phones are further away.
Audio problem: In the prison, Lex tells an inmate he wants his Liberace record, to which he replies, "It has a scratch on it," but his lips don't match the audio. In the Donner version, it's revealed that the original audio was "Tonight?"
Continuity mistake: At the Fortress, when Lois drinks champagne, she holds the glass at chest level. A shot later, her arm is lowered.
Revealing mistake: When Non flies through the White House ceiling, right before he lands on his feet, the shot cuts to Zod landing safely and one can see that the previous stuntman missed the landing and fell on his back, his legs now pointing upwards. According to the shooting script and the additional Donner scenes, the fall was not scripted and not plot-wise.
Revealing mistake: When Superman returns the flag, the wide shots show he has really long arms and a brown blob where the head should be, revealing the actor has been replaced with a dummy.
Continuity mistake: Right before Perry White throws a bronze globe at Non, Lois' head is tilted sideways and she smiles calmly. An instant cut later, her head is straight and she stares in awe. After the globe strikes Non's head, we're back to the previous shot where her head is tilted.
Plot hole: When Superman becomes human for Lois, the molecule chamber nearly rips him apart, he suffers. At the end of the movie, when he tricks out of the evil 3 and turn them into humans with the same radiation, they are just looking around, wondering about the strange lights, but don't suffer at all.
Suggested correction: Well it's established that Superman has altered the machine. Maybe he also reprogrammed it to not leave signs of their powers being removed.
Factual error: When the police car's light is thrown at the boy and it blows up, it shouldn't have happened. The most that would've happened was that the kid would've been knocked off his bike when hit with the light. There is no explosive device in the light, so it shouldn't have exploded in the least like it did.
Plot hole: Lois Lane and other people see Clark Kent unhurt when a taxi hits him and suffers damage, but don't draw the obvious conclusion that there's something extraordinary about him.
Suggested correction: I always took this as an intentional jab at how the people of Metropolis, and Lois in particular, were so oblivious to the fact that Clark was obviously Superman. Still a plot hole, just an intentional one.
Suggested correction: Maybe the cab-driver thinks that Clark is extraordinary, but he is shocked in the first moment, worrying about his damaged car. Later than he realises that this guy is maybe Superman, but cannot find him anymore. Just a guy of millions walking around the big apple.
Revealing mistake: In closeups, you can see Lex Luthor has a bald cap on.
Suggested correction: Much too vague. What scenes are you referring to. And how can you tell, other than knowing that Gene Hackman isn't really bald?
Continuity mistake: When Zod is interviewed by the news reporter the people behind him differ or change positions between shots.
Continuity mistake: When Lois comes out of the river she turns to the left to help Clark. Shot changes and she has turned 180ยบ around.
Revealing mistake: When Superman returns the flag to the White House, not only has the shot been reused, but the trees have been badly cut around to change the previous grey sky for a bright, blue and sunny one.
Revealing mistake: When Non burns the side of the cargo bed of the truck, a rectangular spot around the planks is coloured in a lighter shade, giving away where the special FX were placed.
Revealing mistake: When the villains enter the oval office, the whole White House behind is a cheap set with painted columns, furniture, fixtures and switches (even the bullet holes are painted!). (01:16:29)