Revealing mistake: At the end of "Wormy", Patrick's eyes are missing.
Dying For Pie / Imitation Krabs - S2-E6
Revealing mistake: In the episode "Dying For Pie", you can see Mr. Krabs' legs disappear when Squidward says, "But you can't pay me enough to act brotherly on that guy!" Also, Squidward is standing on 2 tentacles instead of 4.
Big Pink Loser / Bubble Buddy - S2-E3
Revealing mistake: Big Pink Loser: When Patrick says, "Why can't I do anything right?", and starts hitting his broom on the floor, the drinks that are supposed to be on the customers' tables are instead layered behind them. (00:05:18)
The Secret Box / Band Geeks - S2-E14
Revealing mistake: When Squidward asks who has played instruments before and Plankton responds, look at Plankton's triangle. The bottom disappears for a split-second.
Mermaid Man and Barnacle Boy III / Squirrel Jokes - S2-E4
Revealing mistake: When we see Billy get told about the stupid squirrel, he has a sleeve going through his arm. The moment he starts talking, the sleeve disappears and his arm extends over his shirt. Around the end of the shot when he's being pulled away, the sleeve returns.
Big Pink Loser / Bubble Buddy - S2-E3
Revealing mistake: Big Pink Loser: When Patrick is answering phone calls, the third time he picks up and says, "No, this is Patrick", the anchor symbol on his hat briefly vanishes. (00:04:36)
Answer: I believe this is the Season 6 episode "Spongicus".