Deliberate mistake: When Dory is inside the whale, she doesn't have the scars from the jellyfish sting anymore. [This is actually a long-standing Disney tradition. The company seems to believe that it is less traumatic to see violence onscreen if the evidence is gone immediately (blood, scars, etc. always disappear). Still an error, but it wasn't the fault of the CGI animators.]
Picture added by Lummie
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