Audio problem: When Anakin and Padme are talking after their meal together. When the camera is facing Anakin at one point he says "Believe me I wish that I could just wish away these feelings I have for you!" and then stops talking. When the camera switches to face Padme, if you watch closely, Anakin's mouth is still moving even though he isn't saying anything.
Audio problem: When Dooku is trying to bring down the ceiling on top of Yoda in the hangar scene, Yoda stops three rocks in midair with the force and then directs them to his left. One of these rocks hits the wall, breaks in two and also leaves a mark in the wall. Strangely that rock doesn't make any sound at all.