Plot hole: In the episode where Jessica went home to her family's house in season 2, Bill said "someone who lives here must invite me in." In this episode, Russell Edgington's wolf (Coota) invites Russell into Alcide's apartment. Also, in Season 6 Sarah Newlin recinds Jessica's invitation into Jason's house (which only Jason should be able to do).
Plot hole: When Lawquane spots the droids in the field, he identifies them instantly as commando droids. But as he had left the Republic Army shortly after the first battle on Geonosis (the one which started the war) and has lived as a farmer ever since, and since the commando droids are relatively new (see "Rookies"), how can he know what they are? With his lack of battlefield experience, he should simply call them battle droids.
Plot hole: When John inserts Cameron's CPU, she restarts nearly instantly. She recognizes John right away and speaks to him by name. Yet seconds later, we see through her eyes as her system reports recognizing him, but she already does.
Triumvirate of Terror! - S3-E8
Plot hole: After Superman thwarts Lex's plan and knocks the Kryptonite into the sewers, Lex yells in frustration, splits his power suit off and flies away on a jet pack. Superman just lets him go. Wouldn't Superman chase him and catch him, especially seeing as how weak Lex would be like that? (00:07:35)