Deliberate mistake: If you pay extremely close attention to the scene of all of the Decepticons responding to the small Transformer's message regarding the location of the Allspark, notice that the shot of the police car and the fake helicopter pilot are duplicate shots used earlier in the film.
Deliberate mistake: During the scene where Carlos and L.J. are searching the motel, L.J. sees a zombie which turns out to be a reflection in a wall-length mirror. L.J. shoots, breaking the mirror and realizing his mistake. But, if he had been standing in front of the mirror as shown, he should have seen his own reflection standing there as well. This was done as an homage to a similar encounter in the original game. (00:24:20)
Deliberate mistake: Bender goes back in time to two minutes before Fry came back to the past. But if you time it, it was actually only 1 minute and 42 seconds.