Continuity mistake: The henchmen spot Stromwell as he makes a run for it through the train yard. Before the chase begins, Thorne gets in frame in a close-up, and he has eyebrows matching the white of his hair instead of his usual black. (00:17:15)
Continuity mistake: Batman throws a chair and shatters a window. You can see that there is basically no part of the frame nor glass left at the bottom, but when Stromwell looks outside and when Batman gets back in the office, part of it is still standing. (00:15:55)
Continuity mistake: Stromwell tosses on the desk the binder with the information; it does not have a label on the cover, then it does. (00:14:40)
Continuity mistake: Stromwell crushes under his fist the remote control - not bad for a supposed old man! But the remote is also completely gone in the next shot. (00:02:10)
Continuity mistake: Thorne's henchman that stayed behind to check out the aftermath of the explosion is wearing a flower on the lapel of a white coat the first time we see him, and then a gray coat with no flower when he sneaks away to report to his boss. (00:10:15 - 00:11:20)
Answer: She escaped off-screen and created a copy of herself to fool everyone.