Other mistake: The end titles of episodes 2, 5, and 6 of "The Green Death" were run backwards and upside-down. According to some published accounts, this was due to the telecine operator forgetting to rewind the end title film sequence before playback.
Other mistake: Near the end of episode 5, Stevens is reading out previous numbers of slave units and B.O.S.S is telling him the new ones. For New York, the previous figure was 7203 and the new figure 7580. However, for Moscow the previous figure was 10003 (ten thousand and three), and the new figure is 110098 (one hundred and ten thousand and ninety-eight), which is a big difference.
Answer: It was never destroyed on-screen; it was intact at the end of the TV movie, and destroyed by the start of the 2005 series. It was destroyed in the novel "The Ancestor Cell," but in a completely different manner to what happened in the series.
DaveJB