Plot hole: The whole problem with the teleporter occurs when fly DNA is mixed in with Seth Brundle's DNA, starting his transformation into the Brundlefly. Brundle is on a hiding to nothing from the word go, and the fly is irrelevant. Humans are a walking talking mass of foreign DNA - we are host to one trillion bacteria all of which has a complete compliment of DNA, as do various tiny mites that live in our hair follicles and all sorts of single cell organisms in our gut. If the transporter serves to mix the DNA of all living creatures which are in the transporter pod at the time Brundle would turn into a half-man, half-bacteria. Incidentally, DNA from a bacteria, an amoeba or a hair follicle mite would be just as 'compatible' with human DNA as that from an insect. It's quite a simple chemical, really.
Revealing mistake: In the scene where Ronnie visits Brundlefly for the second time we see Brundlefly walking on the ceiling and wall, however his shirt doesn't remain consistent with gravity. This is especially obvious when he pulls his shirt up to show Ronnie his new tumor and then places it back down. The shirt appears to be being pulled up to towards the sky from Ronnie's perspective.
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