When Beth is helping Martin out of Bartok's cocoon, you can see Martin wearing pants inside the cocoon. Surely he should be naked.
In one version of the script, Martin finds another videotape of his father Seth. This tape would show Seth (who is in his part-fly form) explaining the "cure". This scene would have required Jeff Goldblum to be in make-up for five hours, and he didn't want to go through that, so he dropped out, and the scene was cut from the script.