William Riker: Someone once said, "Don't try to be a great man. Just be a man, and let history make its own judgment."
Zefram Cochrane: That's rhetorical nonsense! Who said that?
William Riker: You did! Ten years from now.
Data: Believing oneself to be perfect is often the sign of a delusional mind.
Zefram Cochrane: I gotta take a leak.
La Forge: Leaks? I'm not detecting any leaks.
Zefram Cochrane: Doesn't anyone pee in the 24th Century?
Worf: Assimilate this.
Answer: The borg took control of specific areas of the ship as part of their plan. This included deflector control and the shuttle bay.
Jason HoffmanMy mistake. The main shuttle bay is around decks 5 and 6. The Borg didn't take control of those decks until after the beacon was destroyed.