Continuity mistake: During Kirk's birthday party at the end, Scotty's hair is a different style and colour than the rest of the film. He also has a beard, but there is no time for him to have grown one since this is supposed to be a few days after the battle with Krall.
Star Trek Beyond (2016)
1 continuity mistake
Directed by: Justin Lin
Starring: Idris Elba, Simon Pegg, Chris Pine, Karl Urban, Zoe Saldana, Zachary Quinto, Sofia Boutella
Other mistake: When Krall boards the Enterprise, he lands his ship in the top of the saucer, but then later, Uhura separates the saucer from the neck of the ship with both her and Krall still inside it. And then when they are back on the planet's surface, they arrive there in Krall's very recognizable three-nacelled ship, whereas all of the other ships from that fleet only have two nacelles.
Suggested correction: The other ships were also taking Enterprise crew members, so there's no reason to think whoever was left to pilot Krall's ship couldn't pick up Krall and Uhura.
Question: McCoy joins Kirk for a drink, revealing a bottle he found in Chekov's locker. Firstly, what was he doing in Chekov's locker? Secondly, what's with the two of them clinking glasses with a third drink? The locker and the clinking might suggest Chekov was dead, as they might have to fill in if Anton Yelchin had died before filming was complete, but that's not what happened. Chekov is very much alive in the next scene.
Chosen answer: Why Bones might have been going through Chekov's locker is addressed in another answer. The third glass is not for Chekov - who, as you point out, is alive - it's in memory of Jim's dad, George Kirk, who (as Bones mentions in this scene and as shown in Star Trek 2009) died on the same day Jim was born. Because of this fact, Jim's birthday always reminds him of his dad's death, so they pour a glass, and raise a toast, in his honour every year.
The director reportedly said the 3rd glass was a late addition. Perhaps it can serve both purposes, the scripted intention as well as a subtle tribute. See #7 in https://www.empireonline.com/movies/features/star-trek-beyond-justin-lin-simon-pegg/.
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