Other mistake: The battle droids - including the commando droids featured here - habitually have two broad fingers and a thumb. So how can a commando droid squeeze itself completely into clone trooper armor without its broad fingers tearing open the gloves, since it can't separate its fingers?
Continuity mistake: During the end scene, when Echo and Fives are honored for their services, in the first shot, Echo's helmet is missing, despite his arm being positioned as if he's holding it. When his helmet appears, it's missing the red binocular attachment, which only appears later in the scene. (00:22:00)
Revealing mistake: During the exchange between Hevy and Cutup regarding Echo's enjoyment of their dull posting, the left pauldron of Hevy's armour is positioned weirdly, clipping through his arm at the bottom. (00:01:34)
Continuity mistake: When Rex pulls off the helmet of the disguised commando droid, Cody is missing the piece of armour protecting his right thigh. (00:09:37)
Continuity mistake: Before the clones retake the base, they have just enough blasters between them for all five of them to wield one each. When Rex is dealing with the commando droid captain, his left holster still has a pistol in it even though he loaned his other pistol to Cody. (00:14:00)
Continuity mistake: When Rex starts giving the rookies a pep talk, as well as in the shot afterwards where all the clones grab their helmets, Echo's helmet is missing the binocular attachment. (00:16:28)
Continuity mistake: When Grievous calls a battle droid who asks if the Rishi station's destruction was a good thing an idiot, the clasp of his cloak is missing. (00:21:15)
Continuity mistake: When Obi-Wan says, "Unlike you, maybe he's getting some much-needed rest," he's stroking his chin with his hand. Mid-sentence, the scene cuts to a closer shot of Obi-Wan, and his hand changes position. (00:02:50)