Continuity mistake: When Xander falls through the ground, he lands with his arm on, or very near a bit of wood, but in a closer shot of him just before he gets up, the wood's disappeared and other rubble has moved around too.
Continuity mistake: When Buffy and Willow are talking about the sham of Thanksgiving Day at the groundbreaking ceremony, on one angle (the one where Buffy's face is shown) there is a strong wind blowing, moving their hair about, but in the other (when you can see Willow's face) their hair aren't moving.
Continuity mistake: In the scene where Anya is undressing a sick Xander in his basement, she lifts up his shirt and says 'Help me get your trousers off.' During the following conversation, in the close-up shots his shirt is lifted far up on his chest, but in the wider shots it's covering his whole stomach.
Chosen answer: He had larangitis and because of the shooting specifications they had to have him shoot the scene with a bad throat, they then re-recorded his lines and dubbed them. At various points during the scene and indeed the episode you can see him touch his throat or rub it.