Continuity mistake: Notice the candle on the table in the Italian restaurant scene during Capt. Kirk and Dr. Gillian dialog. It changes height depending who is talking. (01:03:50 - 01:08:30)
Other mistake: When Kirk uses his hand phaser to melt the lock on the door in the hospital operating room, the phaser is not pointed directly at the lock. The beam leaves the phaser at an angle, which is probably not how the phaser would have been designed to operate. (01:25:20)
Continuity mistake: In the operating room, when Kirk uses a phaser to melt the lock, the hand he is holding the phaser in switches hands in the closeup shot. Additionally, the arm holding the weapon in the closeup is no longer in hospital scrubs, but a similarly colored sweatshirt. (01:25:20)
Answer: They only give him a schematic of the molecule. The man even says, "It would take years to decipher the matrix", or something like that.