Continuity mistake: During the scene where Indy and Marcus are with the Army intelligence agents, watch the agent who is wearing the light blue suit - at the moment when Marcus refers to a secret chamber, the agent in the blue suit has his right hand resting on top the chair that he is sitting on, but in the next shot when he replies "secret chamber" his right hand is now on his face. (00:17:55)
Continuity mistake: When Indy is packing his suitcase to go to Nepal, he picks up a gun that is wrapped in a piece of cloth, he tosses the gun with his left hand into his right hand and begins to unwrap the gun from the cloth by raising his right hand, so that the gun will fall into his left hand, but the gun ends up falling into Indy's right hand instead of his left hand. (00:22:10)
Continuity mistake: When Indy goes through the windscreen in the scene where he is fighting the balding blonde German, the stunt double playing the German has a full head of brown hair. (01:27:10)
Continuity mistake: When Belloq grabs the machine gun, his left hand is on the trigger and his right hand on the gun cartridge as he turns round with his back to the camera, but in the next shot, his right hand is on the trigger and his left hand on the cartridge but in the next shot, his hands have changed position once more, this time left hand on the trigger and right hand on the cartridge. (01:42:55)
Continuity mistake: Several times during the fight in and around the truck the bars around the top of the cab come off and are miraculously back on again. (01:24:05)
Continuity mistake: When Indy climbs onto the pontoon of the airplane from the lagoon in the opening sequence, he is obviously wet from swimming in the lagoon. However, in the next scene as he climbs further, his clothes are miraculously dry as observed by watching them blowing freely during take-off. (00:12:05)
Continuity mistake: When Indiana is confronted by the Cairo swordsman, he already has his left shoulder pointing towards his opponent in the shot where the crowd scatters. But in the following shot, where the swordsman is first seen, Indiana has his right shoulder pointing forward and is just turning around to his left side. (00:40:14)
Continuity mistake: When the temple collapses, Satipo is crouching looking at the chaos. Indy starts to run and there's a wide angle of the passage ahead but Satipo is nowhere around. He couldn't have managed to run that distance in half a second.