Continuity mistake: During the car chase through the desert, the rear view mirrors on both cars disappear and reappear repeatedly.
Continuity mistake: When Lion-O lands after falling down the crevice after encountering the 3-Eyed monster the ThunderCat Logo on his is a red Lion on a black background, in all other shots it's a black lion on a red background. (00:07:30)
Continuity mistake: Multiple times throughout the show, Kimber can be seen in quick shots with light pink hair (the same color as Jem's), when her hair color is actually a dark pink/red color. (02:00:00)