Plot hole: At the end of the episode when Dr. Troy is trying to get Father Shannon to confess to raping the boys, he eventually sticks a scalpel in Father Shannon's thigh, causing bleeding and ultimately making him confess via immense pain. A few minutes later, we see Father Shannon kneeling at the altar repenting/praying his final goodbyes before being escorted away by the police. We see no evidence of pain or blood, etc. Finally, Father Shannon's crimes aside, wouldn't Dr. Troy have been in some form of trouble himself for stabbing somebody?
Audio problem: During the scene right after Julia was looking at Jude's photos and then is on the couch talking to him, pay close attention to the shots behind Jude. At least three different times, when Jude is talking to Julia about interning at her husband's office, we see Jude's lips moving but hear no words, or, he is speaking but his lips aren't moving at all.