Witchstock - S6-E11
Plot hole: After Paige changes the past, the ghost of Grams changes from a no-nonsense demon-hunter into a pacifist hippie. So, apparently, we are now in an alternate timeline where Grams never became assertive, and stayed a hippie all her life. The episode went to great lengths to establish that if Grams had stayed a hippie, she and the Charmed Ones would have all died young. But the ghost of Grams was still middle-aged, instead of decades younger, and Wyatt and Chris were still there, but they wouldn't have been if their mother Piper had died as a child.
Plot hole: Rick is menacing Phoebe with a gun near the end of the episode. Why doesn't Paige orb the gun away from him? In fact, why did Phoebe make Piper stay upstairs? Piper could have frozen Rick, and Paige could have orbed him back to the prison. There were several obvious ways to resolve this situation that would not have caused Rick's death.
Witch Wars - S6-E21
Plot hole: In the beginning of the episode the opening screen row Witch Wars has images of the witch Paige saved before the event actually occurred.
Plot hole: When Grams is summoned for Chris's wiccaning, she reminds Piper of "the talk" they had when she was a teenager, about how important and special being a witch was to Grams and how it would be to the girls someday. But in the first episode, the girls have no inkling they are witches, and when they find out it's passed through the maternal line, they wonder if Patty or Grams was a witch - suggesting that they aren't sure or have no memories of them as witches. I know there was some memory altering at certain points, but why would Grams have a conversation specifically about how great it is to be a witch and then erase that?
Plot hole: The innocent who gets Piper's powers uses them to freeze Piper and Phoebe. But even though Piper and Phoebe no longer have their unique powers, they are still good witches; they were still able to scry, and we have encountered good witches on the show in the past who had no powers at all. And by the rules of magic within the show, good witches do not freeze.
Plot hole: When the man and woman receive Piper and Phoebe's powers, the lady freezes the man and Phoebe due to fear, but good witches don't freeze, so if Phoebe froze (which she shouldn't have due to only her active powers lost) then why did the man? If he had Phoebe's powers then he isn't mortal and therefore should not freeze.
Plot hole: When the Avatars agree to rewind time they say that they can either put the world right or save Brody but not both. This doesn't make sense since they're rewinding to right when they put everyone to sleep, which is before Brody was killed.
Show Ghouls - S7-E15
Plot hole: When Leo tells Piper that he believes he found the demon Sargon in the Book of Shadows (which may be the demon Count Roget made a faustian deal with), Piper looks at it and says that they vanquished this demon five years ago. Which would've meant they vanquished the demon with Prue. When in fact the only demon that happened with was Zahn in season 6 episode 6, "Soul Survivor," and they did that with Paige.
Plot hole: When Piper goes back in time to save her sisters from dying and get rid of the Hollow, right after Leo describes it as "time catching up with itself" and the new reality Piper takes over her body. Yet in Season 5 Episode 7 "A Witch in Time", Piper goes back to keep Phoebe from saving her boyfriend but once Piper changes the past, the original Piper fades away and the new reality Piper stays.
Plot hole: In the final episode Piper cast the spell with her mother Patty and grandmother Penny to get the Hollow out of (past) Piper, Phoebe, Paige, Billy and Christy. It worked. But in episode 4x13 Charmed and Dangerous, the only way to contain the Hollow is by good and evil working together... which wasn't the case in the final episode.
