Other mistake: Near the end of the movie, three birds were flying around the room where trees, vines, flower, shrubs, and grass were growing. There is no explanation for where the birds came from, why Jim would revive them from pods (if that's where the first ones were), or why holograms wouldn't detect them. More seriously, where did all the bird droppings (guano) land - without being removed for decades - and how did the uric acid not cause damage/corrosion to the ship? Also, the confined area would be a breeding ground for various possible diseases which could infect the passengers when they came out of their pods. The unplanned introduction of live birds on the spaceship would cause a variety of unintended problems, some deadly.
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