Plot hole: If you successfully go through all the red path on the Lylat System map and reach Venom, the Cyborg Star Wolf team still appears before you can fight Andross. They talk about your previous fight with them, and show their cyborg parts from injuries of crashing when you fight them and win on the third level on the blue path. But going all red path, this is the first time you meet them. So they are injured from you, but never fought you.
Continuity mistake: In the mission of Sector X, you fight the boss Spyborg. For slower players, Spyborg will usually smack Slippy with its hand and send the toad's crippled Arwing hurtling towards the planet Titania. Faster players can destroy Spyborg before it can attack the cocky Slippy. If this is done, you go to Macbeth instead of Titania. However, if you chose to go to Titania anyways, the mission plays out with Slippy crashed and captured by the mission's boss. Yet he didn't get hit and crash in the previous mission.
Trivia: If you clear every level with a Gold Medal, you unlock Expert Mode. While playing Expert Mode, Fox can be seen wearing his father's, James McCloud, sunglasses. This also unlocks the Sound Test feature in the main menu where you can scroll through and listen to every sound effect, music piece, and line of dialogue in the game.
Question: If you beat Brain Andross on the Red Path, the "ghost" of James McCloud, Fox's father, appears and helps Fox escape the exploding base. What is the explanation for this? Is it actually the ghost of James? Was Fox hallucinating? Was James really alive the whole time? What happened exactly?
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Answer: There isn't really an agreed answer to this, and the game leaves it purposely ambiguous. It's entirely possible that James is just a figment of Fox's imagination. It's also possible that his spirit is guiding him or that he's secretly alive. So in truth, any answer would be pure, 100% speculation.
TedStixon