Continuity mistake: When Neo is out on the scaffolding and loses his phone, the first shot down is of an empty street, in the shot of the phone falling the street is filled with people and a big parade, then it cuts to a wider shot and the people have vanished again. (00:15:55)
Cypher betrays the crew of the Nebuchadnezzar by killing Dozer, Apoc, and Switch, and mortally wounding Tank. Just as he is about to kill Morpheus, Trinity and Neo, Tank kills Cypher. Trinity and Neo save Morpheus from Smith, but Smith later kills Neo. He is reawakened by Trinity and he assimilates himself into Smith, becoming "The One".
Agent Smith: I'd like to share a revelation that I've had during my time here. It came to me when I tried to classify your species, and I realised that you're not actually mammals. Every mammal on this planet instinctively develops a natural equilibrium with the surrounding environment; but you humans do not. You move to an area and you multiply, and multiply, until every natural resource is consumed and the only way you can survive is to spread to another area. There is another organism on this planet that follows the same pattern. Do you know what it is? A virus. Human beings are a disease, a cancer on this planet, you are a plague, and we...are the cure. (01:02:20)
Trivia: It's been said that Neo is an anagram for "one". I think it's more important to realise that Neo means "new". His real name is Thomas Anderson. He is called Thomas at the beginning of the movie, when he doubts the truth -- that the world as he knows it is not real. Thomas is the "doubting" disciple in the Bible. Moreover, Anderson means "son of man". Hence, Neo Anderson is the New Son of Man. The biblical references go on and on... Trinity, Nebucadnezzar (the name of the ship -- in fact, the name plate on the ship makes reference to a verse in Mark chapter 3), Zion... So not only is Neo "the One", he has gone from being the doubter to the new son of man.
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