Khan and Kirk duke it out on their respective ships in the Mutara nebula. Khan disables the Enterprise with a lucky shot. Kirk disables the Reliant with an experienced shot. Khan activates the Genesis device only giving the crew of the Enterprise 5 minutes to get out of the nebula. Spock sacrifices his life to jump start the Enterprise and escape the nebula with no time to spare.
Kirk sends Spock's body down to the Genesis planet and McCoy walks off with Spock's katra.
Trivia: This movie is basically a retelling of another story. When the camera first pans the shelves of the Botany Bay it stops and centers on one book on the shelf in particular.....Moby Dick. That is what this movie is about. Khan is Ahab, The Enterprise is Moby Dick. At one point in the book the whale is circling Ahab's ship on the ocean. At one point in the movie the Enterprise is circling the Reliant (Khan's ship) in the Motara Nebula. Ahab had a scar up one entire side of his body given to him by an encounter with the Whale. At the end of the movie Khan has a burn mark/scar up one side of his body as well. Not to mention that Khan quotes from Moby Dick throughout the movie. The last quote he utters is one that Ahab uttered "From Hell's heart, I stab at thee, for hate's sake I spit my last breath at thee."
Question: This isn't technically a mistake per se, but it involves Spock's funeral. Several Enterprise crewmembers are killed during the battle with Khan, and yet only Spock gets a funeral. Perhaps there was a smaller memorial for the others, and Spock got a full funeral due to his status as captain, but why is Kirk only sending Spock's body to the Genesis planet? I imagine he sent only Spocks's body there since in ST3 there aren't dozens of little regenerated human babies crawling around down there.
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