Plot hole: When Charlie sets out to hijack the money train, he jumps off the platform onto the tracks as it arrives, in plain sight of the driver and other passengers at the station, and only puts his mask on once he's in position on the tracks. The train conveniently stops right over top of Charlie, allowing him to enter through the conveniently-placed grate on the train's floor. (01:17:15)
Plot hole: Why was $100,000,000 worth of heroin sitting in the police vault all this time before the bad guys stole it? Wouldn't the DEA have taken possession of the drugs long before that?
Plot hole: When they are on the subway train, they are talking about the worm and the virus. They said that everything would happen on the 14th. A couple of scenes later, when they are setting up for the traffic lights to go crazy at 9:00, Dade looks at his watch. You can see the date as 10-18, which is 4 days afterwards. (01:17:15 - 01:22:50)
Plot hole: The group poison a dozen or so people and dispose of their bodies by burying them in their own garden. Some of their victims are notable celebrities - television presenters, authors, leaders of large and vocal pressure groups. Certainly some of them are nobodies, but nonetheless they are going to tell friends where they are going for dinner! Not one of these people told their assistants or their secretaries or a friend or a relative - a spouse? - where they were going and what they were doing on the night they were murdered? Not one of them? Not one single trace was left for the police to follow? Absolutely impossible.
Plot hole: When Jack first gets the diskette after arranging the theft of Angela's bag, he cuts his hand to show he struggled with the thief. The next scene shows them on his boat, a few hundred yards from shore, where Angela is helping dress the wound. They then speak of calling the police. When they'd just walked along the beach from the resort, and with the hotel in the background on shore in the scene, why would they take the time & trouble to (presumably go to a dock), get on the boat, drive out a few hundred yards, stop the boat, sit down and THEN deal with the wound, and talk of the police, instead of simply walking back to the hotel & getting it all dealt with immediately? (00:29:00)
Plot hole: For the transaction with the buyers, Moore sets up two hotel rooms: one where she will be based and the other for the buyers. She also goes about setting it up so that her toy truck can be navigated through the ventilation system, with a camera and having a private speaker system between them. Now when Banderas finds the room with the buyers he is unaware of where she is but knows she's close and checks the hotel's billing system on the television. On the TV the room number she registered with is shown. She went to all this effort to protect herself and yet registered the other room in her name and linked it with her room? Its not like she would have missed something so important because she would have needed to sign in when checking into the hotel. It seems to only serve the plot as Banderas relied on this information to find her and make his move to try and eliminate her.
Plot hole: When SWAT enters Peters wife's room, the officer reaches for her neck and almost as soon as he touches her, he states "no pulse". This guy's EMT skills are phenomenal! Carotid pulse with a glove on in less than 2 seconds. This guy is good.
Plot hole: In the scene at Wayne Manor where they show Harvey "Twoface" getting scarred with the acid on TV, you can see the acid cover almost his entire face before he puts the folder over to protect it. (00:24:15)
Plot hole: In the scene after the bank job where Charlene waves Chris off alerting him of the setup, Chris drives away and is stopped by the cops to verify who he is. He has a fake ID and they let him go. The police CLEARLY know who Chris is and what he looks likes for most of the movie but somehow, those cops don't have anything with Chris' name and face on it?
Plot hole: Jose is the only one carrying the bag of money, then he gets killed, in the next scene Anthony and the others have the bag on the table though none of them were carrying one besides Jose.
Suggested correction: Kirby and Klingon were both running with bags of money.
Plot hole: The premise is that the back-story is a fabrication, including the five being placed together in the police line-up and in custody in order to get them to work together. But in the flashback of Keaton in the restaurant, it is Dave Kujan who takes Keaton in. It is inconceivable that Kujan would be complicit in the staging of the line-up (and doesn't fit with the plot). And if Verbal is inventing it, then Kujan is going to know it didn't happen. It doesn't make sense and undermines the plot.