Plot hole: Nile checks the gun Andy gave her and realises it's empty, which in turn leads her to realise that Booker was setting them up, because he gave that gun to Andy in the first place. No way that Nile, a marine, and Andy, a timeless warrior, somehow both missed the noticeable difference in weight between a fully loaded pistol and an empty one.Jon Sandys
Continuity mistake: After the initial attack on the church we seek camera shots of the interior as if Copley has access to CCTV images of the interior (rather than helmet cams), but Copley does not see anything that happens in the room again. The last soldier killed at the church gives a signal to the soldier behind him, but there is nobody following him.
Continuity mistake: When driving the silver Audi A6 the first time, the version they are driving is a diesel, seen by the exhaust pipes facing down towards the ground with a bend. In the next shot they are driving the petrol version of the same A6, seen by the exhaust pipes holes facing directly out from the car. (01:18:33)